Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30835
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0480 + 29639124-29639412,29639476-29639552,29639639-296397... 109 2e-24
10_08_0225 - 15995436-15995555,15995655-15995735,15995813-159959... 95 7e-20
02_05_0567 + 30029862-30030136,30030299-30030384,30031663-300318... 33 0.17
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 32 0.40
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044... 32 0.53
05_05_0237 - 23526613-23527178,23527979-23528066,23528384-235285... 31 0.93
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 31 1.2
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 30 2.1
03_06_0443 + 33973229-33973311,33973422-33973510,33974873-339750... 30 2.1
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 29 2.8
01_05_0228 - 19535480-19536169,19536397-19536399 29 2.8
11_06_0700 - 26404490-26404747,26405081-26405154,26405420-264054... 29 4.9
11_02_0149 - 8801675-8804332 28 6.5
08_01_0895 - 8806113-8806220,8806642-8806712,8806969-8807155,880... 28 8.6
05_06_0150 - 25994562-25995980 28 8.6
>01_06_0480 +
29639124-29639412,29639476-29639552,29639639-29639749,
29639944-29640012,29640650-29640706,29640814-29640852,
29640957-29641061,29641158-29641240,29641333-29641414,
29641760-29641903,29641987-29642067,29642166-29642294
Length = 421
Score = 109 bits (262), Expect = 2e-24
Identities = 50/87 (57%), Positives = 65/87 (74%)
Frame = +3
Query: 249 ERCWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQA 428
+ WP+V+ L E + EL+L+EGS+TV TTRKT DPYIIIKA + +KLLSRSVP QA
Sbjct: 101 QEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVPAPQA 160
Query: 429 SRVLDDEIGCDIIKINSFVRKKETFLK 509
++L+DE+ C IIKI S +R KE F+K
Sbjct: 161 IKILNDEMSCAIIKIGSIIRNKERFVK 187
Score = 87.8 bits (208), Expect = 8e-18
Identities = 44/83 (53%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
Frame = +2
Query: 479 ICSQKRNLFERRQRLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDT 658
I K +RR RL+GP TLK+IE+LT CY+LVQGNT +A+G +KGL QV R+VED
Sbjct: 178 IIRNKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVEDC 237
Query: 659 MKNI-HPMYNIKS*WLK-EIMKD 721
+KN+ HP+Y+IK +K E++K+
Sbjct: 238 IKNVKHPVYHIKELLIKRELVKN 260
Score = 35.5 bits (78), Expect = 0.043
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 154 KIPKFTPDDNPHGLLEESKFATLFPKYR 237
KI +F P N G+LE + F+TLFP+YR
Sbjct: 41 KIEEFDPSWNEGGMLEVTSFSTLFPQYR 68
>10_08_0225 -
15995436-15995555,15995655-15995735,15995813-15995956,
15996305-15996386,15996479-15996561,15996655-15996759,
15996869-15996907,15997004-15997060,15997701-15997769,
15997959-15998069,15998382-15998564
Length = 357
Score = 94.7 bits (225), Expect = 7e-20
Identities = 47/83 (56%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
Frame = +2
Query: 479 ICSQKRNLFERRQRLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDT 658
I K +RR+RL+GP TLK+IE+LT CY+LVQGNTV+A+G +KGL QVRR+VED
Sbjct: 117 IIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWKGLKQVRRVVEDC 176
Query: 659 MKNI-HPMYNIKS*WLK-EIMKD 721
+KNI HP+Y+IK +K E+ K+
Sbjct: 177 IKNIKHPVYHIKELLIKRELAKN 199
Score = 94.3 bits (224), Expect = 9e-20
Identities = 42/65 (64%), Positives = 54/65 (83%)
Frame = +3
Query: 315 IEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKK 494
+EGS+TV TTRKT DPYII+KA++ +KLLSRSVP QA ++L+DE+ CDIIKI S +R K
Sbjct: 62 VEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDEMSCDIIKIGSIIRNK 121
Query: 495 ETFLK 509
E F+K
Sbjct: 122 ERFVK 126
>02_05_0567 +
30029862-30030136,30030299-30030384,30031663-30031811,
30032581-30032685,30032779-30032895,30033251-30033394,
30033519-30033668
Length = 341
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
R++GP+G +LK +E T+C VL++G
Sbjct: 211 RILGPRGNSLKRVEATTDCRVLIRG 235
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 32.3 bits (70), Expect = 0.40
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
RL+GP+G +LK +E T+C V ++G
Sbjct: 159 RLLGPRGNSLKRVEATTQCRVYIRG 183
>01_06_1593 +
38502884-38502993,38503580-38503665,38504352-38504497,
38504817-38504933,38505028-38505144,38505858-38506001,
38506099-38506251
Length = 290
Score = 31.9 bits (69), Expect = 0.53
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
RL+GP+G +LK +E T+C V ++G
Sbjct: 159 RLLGPRGNSLKRVEASTQCRVYIRG 183
>05_05_0237 -
23526613-23527178,23527979-23528066,23528384-23528527,
23528674-23528790,23528860-23528970,23530911-23531062,
23531362-23531450,23531664-23531761
Length = 454
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
RL+GP+G +LK IE T C V ++G
Sbjct: 156 RLLGPRGNSLKRIEASTGCRVFIRG 180
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
RL+GP+G +LK +E T C V ++G
Sbjct: 156 RLLGPRGNSLKRVEASTGCRVFIRG 180
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
R++GP+G +LK +E T C V ++G
Sbjct: 158 RILGPRGNSLKRVEASTGCRVFIRG 182
>03_06_0443 +
33973229-33973311,33973422-33973510,33974873-33975024,
33975463-33975579,33975729-33975776,33976169-33976312,
33976715-33976858
Length = 258
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
R++GP+G +LK +E T C V ++G
Sbjct: 114 RILGPRGNSLKRVEASTGCRVFIRG 138
>03_05_1149 + 30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 29.5 bits (63), Expect = 2.8
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 417 FEQASRVLDDEIGCDIIKINS 479
F Q VL+D++GCD+I++++
Sbjct: 1071 FRQEMHVLEDQVGCDLIQVDN 1091
>01_05_0228 - 19535480-19536169,19536397-19536399
Length = 230
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/63 (25%), Positives = 38/63 (60%)
Frame = +3
Query: 333 VKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKD 512
+K +K +D I+K R + ++ S+P ++ ++ + IG D++KI++ R+ E ++++
Sbjct: 132 IKAIKKRFDA--IVKGRSYYSTIANSIPVDRPAQHVSKTIG-DVMKIDA-QRRHEFYVEN 187
Query: 513 GRG 521
G
Sbjct: 188 PCG 190
>11_06_0700 -
26404490-26404747,26405081-26405154,26405420-26405476,
26406072-26406135
Length = 150
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 227 GNNVANLLSSKRPCGLSSGVNLGIFIAQALSTELVSSTSILVFIKCSV-ASKEMIFLLKR 51
G N S K L V L IF++ T+L ++ +LV +K + KE IF++ +
Sbjct: 43 GKNTVGTESLKVEFSLDCTVTLVIFLSTLNPTKLQATEMLLVLLKKEIKGDKEQIFVISK 102
>11_02_0149 - 8801675-8804332
Length = 885
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = -2
Query: 523 QPLPSFKKVSFLRTNELILIMSHPI-----SSSSTREACSNGTLLDNSFMKSRALIIMYG 359
+ LP++ K+ LRT+++ ++ PI SS + CSN ++ + + +AL ++
Sbjct: 743 EELPAYCKIEMLRTDDIAGVLVTPICRLFSSSLNVLGLCSNKEIVSFTKEQEKALELITS 802
Query: 358 SQVFLVVFTVKLPSIKSN 305
Q KL S+ ++
Sbjct: 803 LQDLCFFHNEKLQSLPAD 820
>08_01_0895 -
8806113-8806220,8806642-8806712,8806969-8807155,
8807473-8807603,8807679-8807811,8808124-8808242,
8808751-8809039,8809150-8809272,8809300-8809323,
8810016-8810072,8810148-8810255
Length = 449
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 427 ACSNGTLLDNSFMKSRALIIMYGSQVFLVVFTVKLPS 317
A GTLL + M++R I YG + ++ T++L S
Sbjct: 294 AALEGTLLFDELMQARQAIYCYGIVILILQITIQLVS 330
>05_06_0150 - 25994562-25995980
Length = 472
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Frame = +3
Query: 222 ISKVSRAIPERCWPL-----VQKIL--SEHHIVAELDLIEGSLTVKTTRKTWDPYIIIKA 380
+ + A+P CWPL + K++ E I LD E VK ++++A
Sbjct: 364 LEAIMSALPMICWPLYAEQAMNKVIMVEEMKIAVSLDGYEEGGLVKAEEVEAKVRLVMEA 423
Query: 381 RDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKE 497
+ KL R V + E G + + F+R E
Sbjct: 424 EEGRKLRERLVETRDMALDAIKEAGSSEVAFDEFMRDLE 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,645,550
Number of Sequences: 37544
Number of extensions: 289152
Number of successful extensions: 699
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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