Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30835
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)                 64   1e-10
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 32   0.41 
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_35327| Best HMM Match : Cellulase (HMM E-Value=4e-05)               28   6.7  
SB_26753| Best HMM Match : BTK (HMM E-Value=3.9)                       28   6.7  
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
          Length = 1223

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 6/64 (9%)
 Frame = +1

Query: 109 MEVEETNSVDNAWA------MKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKDAGPWY 270
           M  E+T  +  AW        ++ KF+ DDNP+G++EES FATLFPKYRE+YLK+  P  
Sbjct: 1   MADEQTTEIAPAWDHEGIDHWRVDKFSADDNPYGVVEESSFATLFPKYREKYLKEVWPLV 60

Query: 271 RKYL 282
            K L
Sbjct: 61  EKEL 64



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
 Frame = +2

Query: 608 VGPYKGLVQVRRIVEDTMKNIHPMYNIKS*WLK-EIMKD 721
           +GP    ++VR++VE+TMKN+HP+YNIK+  +K E+ KD
Sbjct: 101 IGPNCATLKVRKVVEETMKNVHPIYNIKTLMIKRELAKD 139



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 19/30 (63%), Positives = 23/30 (76%)
 Frame = +3

Query: 420 EQASRVLDDEIGCDIIKINSFVRKKETFLK 509
           E A R+L+DE+ CDIIKI S VR KE F+K
Sbjct: 66  EHAKRILEDEVACDIIKIASLVRNKERFVK 95



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 491 KRNLFERRQRLIGPQGVTLKSIELLTE 571
           K    +RRQRLIGP   TLK  +++ E
Sbjct: 90  KERFVKRRQRLIGPNCATLKVRKVVEE 116


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = -1

Query: 173 GVNLGIFIAQALSTELVSSTSILVFIKCSVASKEMIFLLKRLR-REIYLEFGTI 15
           G+ LG+++A+A    +V+S ++ VF+K    +K+  +LL  L   ++ + F TI
Sbjct: 669 GLLLGVYLAEACVIVIVNSLALAVFLKKKFRAKKSTYLLVNLTVADLMVGFTTI 722


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 312  LIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVP--FEQASRVLDDEIGCDIIKIN 476
            LI   LT+  T +TWDP ++    +   LLS  +     + ++      G D+++ N
Sbjct: 3066 LITIELTIALTNETWDPALLTSGSEAYMLLSNRIQENVVEFAKGFSSFAGVDLLEFN 3122


>SB_35327| Best HMM Match : Cellulase (HMM E-Value=4e-05)
          Length = 353

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 97  IKTNMEVEETNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKDAG-PW 267
           ++TN++     +  +  A  +  + P DN  G L+E +    F +Y  + LK+ G PW
Sbjct: 256 VETNIQYATNFTQTSKLATYLGAWMPTDNKDGALDEGE-VIKFARYFSKKLKEQGVPW 312


>SB_26753| Best HMM Match : BTK (HMM E-Value=3.9)
          Length = 194

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = -2

Query: 421 SNGTLLDNSFMKSRALIIMYGSQVFLVVFTVKLPSIKSNSATM*CSLSIFCTKGQHLSGI 242
           SNG+ LD+S  + +    +  +   L V+T+ L  + S +  +  +   F  +  +LS  
Sbjct: 14  SNGSFLDSSQAREKGAYELLSTINLLSVYTINLVHLASKTCQVKANTPAF--EQVNLSRK 71

Query: 241 ALDTLEIMWRIYFLLKGHAGCRR 173
            L T  +    +FL      CRR
Sbjct: 72  NLSTFPVYTSNFFLSSKTRPCRR 94


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 521 LIGPQGVTLKSIELLTECYVLVQG 592
           LIGP+G TLK++E  T   ++++G
Sbjct: 121 LIGPRGNTLKNMEKETNAKIMIRG 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,772,255
Number of Sequences: 59808
Number of extensions: 364616
Number of successful extensions: 848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)