Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30835
(722 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08420.1 68418.m00992 expressed protein 118 4e-27
At5g56140.1 68418.m07003 KH domain-containing protein 34 0.11
At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus... 34 0.11
At1g09660.2 68414.m01085 KH domain-containing quaking protein, p... 33 0.19
At1g09660.1 68414.m01084 KH domain-containing quaking protein, p... 33 0.19
At2g38610.2 68415.m04743 KH domain-containing protein 31 0.77
At2g38610.1 68415.m04742 KH domain-containing protein 31 0.77
At3g08620.1 68416.m01001 KH domain-containing protein 31 1.0
At3g52930.1 68416.m05834 fructose-bisphosphate aldolase, putativ... 28 5.5
At4g03560.1 68417.m00488 two-pore calcium channel (TPC1) identic... 27 9.5
At2g36460.1 68415.m04475 fructose-bisphosphate aldolase, putativ... 27 9.5
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote... 27 9.5
>At5g08420.1 68418.m00992 expressed protein
Length = 391
Score = 118 bits (284), Expect = 4e-27
Identities = 52/87 (59%), Positives = 68/87 (78%)
Frame = +3
Query: 249 ERCWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQA 428
+ CWP V+ L E+ + +L+L+EGS+TV TTRKT DPYII+KARD +KLLSRSVP QA
Sbjct: 72 QECWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQA 131
Query: 429 SRVLDDEIGCDIIKINSFVRKKETFLK 509
++L+DE+ CDIIKI + VR KE F+K
Sbjct: 132 IKILEDEVQCDIIKIGNLVRNKERFVK 158
Score = 98.7 bits (235), Expect = 3e-21
Identities = 46/79 (58%), Positives = 64/79 (81%), Gaps = 2/79 (2%)
Frame = +2
Query: 491 KRNLFERRQRLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNI 670
K +RRQRL+GP TLK++E+LT CY+LVQG+TV+A+GP+KGL Q+RRIVED ++NI
Sbjct: 153 KERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKGLKQLRRIVEDCVQNI 212
Query: 671 -HPMYNIKS*WL-KEIMKD 721
HP+Y+IK+ + KE+ KD
Sbjct: 213 MHPVYHIKTLMMKKELEKD 231
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 157 IPKFTPDDNPHGLLEESKFATLFPKYREQYLKDAGP 264
I KF P NP G+ E S F+TLFP+YRE+YL++ P
Sbjct: 41 IEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWP 76
>At5g56140.1 68418.m07003 KH domain-containing protein
Length = 315
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
RL+GP+G +LK +E T+C VL++G
Sbjct: 185 RLLGPRGNSLKRVEASTDCRVLIRG 209
>At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus
musculus
Length = 555
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
RL+GP+G +LK +E T+C VL++G
Sbjct: 426 RLLGPRGNSLKRVEASTDCRVLIRG 450
>At1g09660.2 68414.m01085 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 264
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
R++GP+G +LK +EL T C V ++G
Sbjct: 166 RILGPRGNSLKRVELATHCRVFIRG 190
>At1g09660.1 68414.m01084 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 298
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
R++GP+G +LK +EL T C V ++G
Sbjct: 166 RILGPRGNSLKRVELATHCRVFIRG 190
>At2g38610.2 68415.m04743 KH domain-containing protein
Length = 286
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
RL+GP+G +LK +E T C V ++G
Sbjct: 155 RLLGPRGNSLKRVEATTGCRVFIRG 179
>At2g38610.1 68415.m04742 KH domain-containing protein
Length = 286
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
RL+GP+G +LK +E T C V ++G
Sbjct: 155 RLLGPRGNSLKRVEATTGCRVFIRG 179
>At3g08620.1 68416.m01001 KH domain-containing protein
Length = 283
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 518 RLIGPQGVTLKSIELLTECYVLVQG 592
RL+GP+G +LK +E T C V ++G
Sbjct: 154 RLLGPRGNSLKRVEATTGCRVYIRG 178
>At3g52930.1 68416.m05834 fructose-bisphosphate aldolase, putative
similar to SP|O65735|ALF_CICAR Fructose-bisphosphate
aldolase, cytoplasmic isozyme {Cicer arietinum},
cytosolic aldolase [Fragaria x ananassa] GI:10645188;
contains Pfam profile PF00274 Fructose-bisphosphate
aldolase class-I
Length = 358
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 216 HIISKVSRAIPERCWPLVQKILSEHHIVAELDLIEGSL-TVKTTRKTWDPYIIIKARDFM 392
H I K + A+ ER K LS+HH++ E L++ ++ T + P +I A +
Sbjct: 192 HDIQKCA-AVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDSPKVSPEVI--AEHTV 248
Query: 393 KLLSRSVP 416
+ L R+VP
Sbjct: 249 RALQRTVP 256
>At4g03560.1 68417.m00488 two-pore calcium channel (TPC1) identical
to two-pore calcium channel (TPC1) [Arabidopsis
thaliana] gi|14041819|dbj|BAB55460
Length = 733
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 382 RALIIMYGSQVFLVVFTVKLPSIKSNSATM*CSLSIFCTKGQHLSG 245
R L+ + + F+ F +PS+ T+ C L I+C+ G + G
Sbjct: 543 RLLMNVQRYRAFIATFITLIPSLMPYLGTIFCVLCIYCSIGVQVFG 588
>At2g36460.1 68415.m04475 fructose-bisphosphate aldolase, putative
similar to PIR|S65073 fructose-bisphosphate aldolase (EC
4.1.2.13) isoenzyme C-1, cytosolic [Oryza sativa];
contains Pfam profile PF00274 Fructose-bisphosphate
aldolase class-I
Length = 358
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 216 HIISKVSRAIPERCWPLVQKILSEHHIVAELDLIEGSL-TVKTTRKTWDPYIIIKARDFM 392
H I K + A+ ER K LS+HH++ E L++ ++ T + P +I A +
Sbjct: 192 HDIQKCA-AVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSESAKVAPEVI--AEHTV 248
Query: 393 KLLSRSVP 416
+ L R+VP
Sbjct: 249 RALQRTVP 256
>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor protein
kinase-like protein GI:10177178 from [Arabidopsis
thaliana]
Length = 1045
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 479 ICSQKRNLFERRQRLIGPQGVTLKSIELLTECYVLVQGNTVSAVGP 616
+CS+ RNL+ +L G L ++ +T +L+ GN++S V P
Sbjct: 239 LCSELRNLYLHMNKLTGSIPKELGKLQKITS--LLLWGNSLSGVIP 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,301,962
Number of Sequences: 28952
Number of extensions: 254445
Number of successful extensions: 650
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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