Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30834
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    72   4e-14
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    72   4e-14
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    72   4e-14
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    40   2e-04
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    32   0.047
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   1.0  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   3.1  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   5.4  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   5.4  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   7.2  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    24   9.5  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 72.1 bits (169), Expect = 4e-14
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = +1

Query: 4   IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
           I  +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 399 IAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 72.1 bits (169), Expect = 4e-14
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = +1

Query: 4   IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
           I  +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 399 IAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 72.1 bits (169), Expect = 4e-14
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = +1

Query: 4   IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
           I  +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 399 IAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +1

Query: 4   IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 129
           I  L    P+C+E F+++  +GRF +RD   TVAVG V+K ++
Sbjct: 620 IAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 31.9 bits (69), Expect = 0.047
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 28  PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 120
           PLC+   +E P LGRF +R    TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = -2

Query: 263 PSKTFR*MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPAS--LKLTALMTPTATVCL 90
           P K+ R +  +  M +  ++ S YF     F +A   +P P S  + LT + T  + V  
Sbjct: 268 PMKSSRDISRKPSMASSVLSPSDYFPQHRRFQSAPAPIPRPVSTLIPLTQVRTTASNVIK 327

Query: 89  -MSRTAKRPRGGNSWK 45
              +T +RP    S++
Sbjct: 328 PRPQTTERPSTAQSFR 343


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 218 FSYNCDTSFTERFSKEKRATNSFLFYIFYKACNVTLFY 331
           FS     S +E  +  K A++SF   IF K C  TL++
Sbjct: 43  FSCTQKPSVSENENVGKYASSSFAERIFCKNCGTTLYF 80


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 185 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTA 75
           P  + ++   T+PP  S+  T  + PT ++   + TA
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 158 VTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 36
           + L P +S  +    TP+AT    S+  + P GG    D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +2

Query: 212 HNFSYNCDTSF-TERFSKEKRATN--SFLFYIFYKACNVTLFYNL-YKVIHNISETFCYD 379
           H++SY C+T F   +  K+  + N  +  FY+      +T+ Y + +  +  +   +C  
Sbjct: 241 HHYSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDDLGFVQPNYCIS 300

Query: 380 CKLK 391
             LK
Sbjct: 301 YILK 304


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 270 LFSFENLSVNEVSQLY 223
           LFS ENLS+NE  Q++
Sbjct: 59  LFSLENLSMNEKYQVF 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,753
Number of Sequences: 5004
Number of extensions: 25157
Number of successful extensions: 83
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)