Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30834
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 69 1e-12
03_01_0547 + 4093196-4093657,4094267-4095148 69 1e-12
03_01_0544 + 4082528-4082989,4083585-4084466 69 1e-12
03_01_0543 + 4076981-4077442,4078145-4079026 69 1e-12
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 36 0.012
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 35 0.035
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 35 0.035
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 31 0.43
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 2.3
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 5.3
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 27 7.1
09_04_0400 + 17296414-17296854,17299212-17299403 27 9.3
01_02_0102 - 11148219-11148563,11148650-11149534 27 9.3
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 69.3 bits (162), Expect = 1e-12
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 4 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
+V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 69.3 bits (162), Expect = 1e-12
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 4 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
+V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 69.3 bits (162), Expect = 1e-12
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 4 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
+V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 69.3 bits (162), Expect = 1e-12
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 4 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
+V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 36.3 bits (80), Expect = 0.012
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 1 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
A++ + K +CVE F LGR +R T+AVG++ V
Sbjct: 609 AVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 34.7 bits (76), Expect = 0.035
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 1 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 117
A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 633 AVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 34.7 bits (76), Expect = 0.035
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 1 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 117
A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 633 AVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 31.1 bits (67), Expect = 0.43
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 31 LCVESFQEFPPLGRFAVR 84
+C+E+F +FP LGRF +R
Sbjct: 398 ICIENFSDFPQLGRFTLR 415
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 335 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 255
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 119 LMTPTATVCLMSRTAKRPRGGNSWKDST 36
LM T +VC S+ + P G W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651
>06_03_1067 -
27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 185 PLVAFSAALVTLPPPA-SLKLTALMTPTATVCLMSRTAK-RPRGGNSW 48
P A L +L PP + T+L+TP A L+S + R RG +S+
Sbjct: 40 PRAAILRWLASLSPPCRAAAATSLLTPAAAAALLSMLRRLRARGHSSF 87
>09_04_0400 + 17296414-17296854,17299212-17299403
Length = 210
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 203 SSSYFLPLVAFSAALVTLPPPASLKLTALMTP 108
SSS+ P ++FS+ PPP + + A+ P
Sbjct: 16 SSSFMAPRISFSSDFALEPPPPAQQQPAVRAP 47
>01_02_0102 - 11148219-11148563,11148650-11149534
Length = 409
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 260 SKTFR*MKYR--SCMKNCAVNSSSYFLPLVAFSAALVTLPPP 141
S F+ MK R + N V S S+FLP+V F+A PPP
Sbjct: 256 SLNFKVMKERMYKIISNAIVVSYSHFLPVVPFNA--FNPPPP 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,751,875
Number of Sequences: 37544
Number of extensions: 160184
Number of successful extensions: 505
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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