Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30834
(453 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 77 5e-15
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.002
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 31 0.45
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 1.4
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 1.8
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 3.1
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 4.2
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 4.2
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 4.2
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 4.2
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 4.2
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 4.2
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034) 27 7.3
SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3) 27 9.6
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9) 27 9.6
SB_4186| Best HMM Match : ADK (HMM E-Value=0.094) 27 9.6
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 77.4 bits (182), Expect = 5e-15
Identities = 33/43 (76%), Positives = 41/43 (95%)
Frame = +1
Query: 1 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 129
A+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 259 AMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVD 301
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 1 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 117
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 31.1 bits (67), Expect = 0.45
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 1 AIVNLVPSKPLCVESFQEFPPLGRFAVRD 87
AI L +C+E F +F +GRF +RD
Sbjct: 517 AIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 365 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPS 258
+QI+Y+ Y KI +H++ K RK + L FFPS
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPS 342
>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
Length = 495
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 128 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 30
LT+L PT L RT +PR G W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 113 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 18
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 3404
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 18 TFQASMCRVLPGIPTPRSFCCP*HEADS 101
T + R LPGI P CC H DS
Sbjct: 2446 TEETEEMRTLPGIANPEGPCCVNHTMDS 2473
>SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3)
Length = 231
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 96
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFFAVSVSYIRDILQ 32
>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
Length = 492
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 403 YEFTL*FAVITKCFRYI 353
Y + + FA+IT+CFRY+
Sbjct: 34 YVYPVFFAMITRCFRYV 50
>SB_4186| Best HMM Match : ADK (HMM E-Value=0.094)
Length = 1053
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -2
Query: 191 FLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSW 48
F P V +L P AS + A M VC +S T GGN +
Sbjct: 540 FAPKVTLPYSLPFFTPGASGTIEAKMIARKVVCKLSITVLMAYGGNDY 587
>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 335 NYKIMLHYKPCKKYRKGMSL*PF 267
+YK L KPCK +R+G PF
Sbjct: 253 DYKSALGAKPCKYFREGKGTCPF 275
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,425,010
Number of Sequences: 59808
Number of extensions: 185669
Number of successful extensions: 583
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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