Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30834
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    74   6e-14
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    74   6e-14
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    74   6e-14
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    41   5e-04
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z19158-2|CAA79571.3|  262|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   1.6  
U13875-5|AAA21163.1|  739|Caenorhabditis elegans Set (trithorax/...    29   2.1  
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z37092-3|CAA85454.1|  266|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical ...    27   6.4  
AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical...    27   8.4  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 33/41 (80%), Positives = 38/41 (92%)
 Frame = +1

Query: 4   IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
           IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 367 IVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 33/41 (80%), Positives = 38/41 (92%)
 Frame = +1

Query: 4   IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
           IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 401 IVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 33/41 (80%), Positives = 38/41 (92%)
 Frame = +1

Query: 4   IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
           IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 401 IVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +1

Query: 4   IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 126
           I+ L   +P  +E F+E+P LGRF +RD  +T+A+G V+K V
Sbjct: 490 IMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -2

Query: 242 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 87
           M Y +C    ++N   Y   L   ++A+V LPPP ++ +  ++   A  C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237


>Z19158-2|CAA79571.3|  262|Caenorhabditis elegans Hypothetical
           protein T23G5.3 protein.
          Length = 262

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -2

Query: 188 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 36
           +P+V  +  L   PPP    L +LM P  TV +  R  K P G NS K  T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 266 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 373
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>U13875-5|AAA21163.1|  739|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           b protein.
          Length = 739

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 186 QEVARAVNSTIFHTTAILHSPKGFRRKK 269
           Q V R++NST+++  +   S +GF RK+
Sbjct: 55  QRVYRSINSTLYNNQSFASSSRGFYRKQ 82


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 1   AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
           A+V +     + +E+F     LGR   R    T+A G+++ V
Sbjct: 547 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 1   AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 126
           A+V +     + +E+F     LGR   R    T+A G+++ V
Sbjct: 565 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606


>Z37092-3|CAA85454.1|  266|Caenorhabditis elegans Hypothetical
           protein F44F4.3 protein.
          Length = 266

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 236 TSFTERFSKEKRATNSFLFYIFYK 307
           ++F   +S++KRA +S LF++FY+
Sbjct: 26  STFVLTYSEDKRAFHSRLFHVFYE 49


>AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical
           protein M04G7.1 protein.
          Length = 258

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 128 LTALMTP-TATVCLMSRTAKRPRGGNSWKDSTHRG 27
           + AL  P T ++CL +   K P  GN+  D T RG
Sbjct: 174 MMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTRG 208


>AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical
           protein Y47G6A.31 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 326 FYNLYKVIHNISETFCYDC 382
           F +L K++ N   TFCY C
Sbjct: 44  FQHLPKLLENCGHTFCYSC 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,555,906
Number of Sequences: 27780
Number of extensions: 146717
Number of successful extensions: 373
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)