Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30834
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    84   6e-19
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    81   6e-18
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   0.67 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   0.67 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   0.67 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   4.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   4.7  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 84.2 bits (199), Expect = 6e-19
 Identities = 39/44 (88%), Positives = 41/44 (93%)
 Frame = +1

Query: 1   AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 132
           AIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAV F
Sbjct: 400 AIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTF 443


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 81.0 bits (191), Expect = 6e-18
 Identities = 37/44 (84%), Positives = 41/44 (93%)
 Frame = +1

Query: 1   AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 132
           AIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+V F
Sbjct: 400 AIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTF 443


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 239 KYRSCMKNCAVNSSSYFLPLVAFS 168
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 239 KYRSCMKNCAVNSSSYFLPLVAFS 168
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 239 KYRSCMKNCAVNSSSYFLPLVAFS 168
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 204 VNSTIFHTTAILHSPKGFRRKKG 272
           +N T   T+ I+  PK   RKKG
Sbjct: 166 MNRTSLKTSKIVSYPKSRSRKKG 188



 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 2   PLSTWYLPSL 31
           P+  WY+PSL
Sbjct: 592 PVQLWYVPSL 601


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 249 KGFRRKKGLQTHSF 290
           KGF+ K+G+Q H +
Sbjct: 353 KGFKLKQGIQFHLY 366


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 232 RYFIHRKVFEGKKGYKLIPFLYFL 303
           +Y IH K  E  +   LI ++Y L
Sbjct: 106 KYLIHLKEIEDTEPILLIAYIYHL 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,595
Number of Sequences: 438
Number of extensions: 2034
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)