Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30833
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    28   1.1  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    28   1.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   4.4  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -2

Query: 517 IRSHQMSLERVLVAIETCSHKLSL--LLPSWQLQADYGLQMILHSF 386
           I +H++S+++   A++  S K+    +L +W+L    G+  IL+SF
Sbjct: 416 IAAHRISVKKAAAALKASSVKIQGRDILATWKLLVALGMTPILYSF 461


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 8   GTSVTGGQTVINPWCTIGGVATT 76
           G+ V G   V+N WC   G+ TT
Sbjct: 189 GSDVIGAGLVVNDWCAFAGLDTT 211


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 208 VPAFRLVQPLVSIYCNLCTKRFCQDQYITHHCIIR 104
           V ++RLV+P+++ Y N    R   D    H C ++
Sbjct: 527 VSSYRLVKPILNSYGNHVLNRIQHDILENHFCCLK 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,430
Number of Sequences: 5004
Number of extensions: 66188
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)