Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30833
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0123 - 927691-929223,930050-930268 30 2.0
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 29 4.6
04_01_0452 - 5859262-5859465,5859618-5859661,5859753-5859954,586... 29 4.6
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783... 28 6.0
04_04_1085 - 30719921-30719960,30720206-30720351,30720469-307205... 28 6.0
07_03_1649 - 28385289-28385358,28387039-28387877 28 8.0
04_03_0509 - 16653153-16653318,16653518-16653650,16653720-166538... 28 8.0
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 28 8.0
>07_01_0123 - 927691-929223,930050-930268
Length = 583
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 553 KILRNKKDIRLGSLVLWRRVTAQPALLINLES 648
+I R ++ RLG + WRR+TA LL+++++
Sbjct: 43 RIWRRRRQRRLGFFLQWRRLTATFCLLLSIQT 74
>05_01_0035 -
232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 337 VTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHAPETS 504
+ G L HA L KN+V + I++ AAV +A +LL+GH + S
Sbjct: 578 LAGKTLPSHAAILCGLVKNQVYSDLEVAFAISEDAAVYRALSQTIELLEGHTSQIS 633
>04_01_0452 -
5859262-5859465,5859618-5859661,5859753-5859954,
5860905-5860949
Length = 164
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 523 CHENRLLRTVKILRNKKDIRLGSLVLWRRVTAQPALLIN 639
C + +L +L+NKK RL +LVL R ++ IN
Sbjct: 21 CGDENMLAMFNVLKNKKSARLENLVLARNSFSRTVYNIN 59
>05_06_0094 +
25477367-25477398,25477516-25477891,25478292-25478315,
25479069-25481828
Length = 1063
Score = 28.3 bits (60), Expect = 6.0
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +3
Query: 189 TNLNAGTESN*LYLKKTFVRHIQSNGLYEQTQSHCSKIDAQVQCSRLNRC-NWFWFTGSC 365
+ L GTE + L +T +H + +G + +HCS + Q R + S
Sbjct: 254 SQLGDGTEKS--QLLQTSQQHYK-DGKSQGGDNHCSTYEPQFSYQRAGAIVDSVEEDTSS 310
Query: 366 TELGISSKE*SIICNP*SACNCQDGSSSESLWEHVSIA 479
T L SKE +I+ NP +C + SSS S ++ A
Sbjct: 311 TVLLTKSKEKTILANPVDLNHCLEISSSGSCLNSINSA 348
>04_04_1085 -
30719921-30719960,30720206-30720351,30720469-30720546,
30720649-30720715,30720948-30721090,30721504-30721535,
30721769-30722168,30722540-30722601,30722716-30722892,
30723078-30723201,30723590-30723760
Length = 479
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 311 STMLTAQQM*LVLVYWVMHRTWHLIKRMKYH 403
S+M+ Q+ L+++ ++R W +IK KYH
Sbjct: 448 SSMVLNHQVALIVLMEQLYRAWTIIKGQKYH 478
>07_03_1649 - 28385289-28385358,28387039-28387877
Length = 302
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +1
Query: 301 LMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLL 480
LM + AHG + L A L + +++ V+H + +AAVA + L+
Sbjct: 12 LMFPWLAHGHINP----YLELATRLTTTSSSQIDVVVHLVSTPVNLAAVAHRRTDRISLV 67
Query: 481 QGHAPETSG 507
+ H PE G
Sbjct: 68 ELHLPELPG 76
>04_03_0509 -
16653153-16653318,16653518-16653650,16653720-16653882,
16654488-16654595,16654986-16655100,16655581-16656083
Length = 395
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 598 IPMIQA*YPSCFSISLQYAAACSRGRQIRSHQMSLERVL 482
I ++A P+ F + L+Y+ A RGR+ RS + + VL
Sbjct: 155 IKALRAPRPAKFQLLLEYSKALERGREERSKRPNYRAVL 193
>02_05_0235 -
27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 5 AGTSVTGGQTVINPWCTIGGVATTICQPNEYIVPDNAVMGDVLVLTKPLGTQVA 166
A + TG +V++ C+ A T E +P NA + + ++ T P GT VA
Sbjct: 704 AKVATTGNSSVVHKECSS---AITRKGTKEVTMPTNAFLSNQILSTSPRGTVVA 754
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,101,208
Number of Sequences: 37544
Number of extensions: 442037
Number of successful extensions: 1217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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