Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30833
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   1e-27
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   4.7  
SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)                28   8.1  

>SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score =  120 bits (288), Expect = 1e-27
 Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 2/88 (2%)
 Frame = +2

Query: 2   EAGTSVTGGQTVINPWCTIGGVATTICQPNEYIVPDNAVMGDVLVLTKPLGTQVAVNAHQ 181
           EAGT+V GGQTV+NPW  IGGVA+++    E I+P+NA +GDVLVLTKPLGTQ+AVNAHQ
Sbjct: 401 EAGTTVNGGQTVLNPWFIIGGVASSVVAKGEAIMPENAEVGDVLVLTKPLGTQIAVNAHQ 460

Query: 182 WLDQP--ERWNRIKLVVSEEDVRKAYPE 259
           W++ P  + WN IK V+++E+V KAY +
Sbjct: 461 WMEDPTCKWWNNIKDVITKEEVIKAYQQ 488



 Score =  114 bits (275), Expect = 5e-26
 Identities = 52/83 (62%), Positives = 67/83 (80%)
 Frame = +1

Query: 259 AMDSMSRLNRIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKM 438
           +M  M+RLNR AARLMHK+ AHG+TDVTGFG+LGHA+NLA+ Q+N+VSF +H LP++A M
Sbjct: 489 SMIFMARLNRNAARLMHKFEAHGATDVTGFGILGHARNLAAIQRNKVSFQLHTLPILANM 548

Query: 439 AAVAKACGNMFQLLQGHAPETSG 507
               KACG  F+LL+G + ETSG
Sbjct: 549 TEAYKACGINFKLLEGFSAETSG 571


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 166  CNLCTKRFCQDQYITHH 116
            C LC+K FC+ +Y+  H
Sbjct: 2627 CELCSKMFCRPEYVAKH 2643



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 166  CNLCTKRFCQDQYITHH 116
            C LC+K FC+ +Y+  H
Sbjct: 3757 CELCSKMFCRPEYVAKH 3773



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 166  CNLCTKRFCQDQYITHH 116
            C LC K+FC  +Y+  H
Sbjct: 2825 CELCGKKFCTPEYVAKH 2841



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 166  CNLCTKRFCQDQYITHH 116
            C LC+K FC+ +Y+  H
Sbjct: 3547 CELCSKIFCRPEYVAKH 3563


>SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)
          Length = 611

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 166 CNLCTKRFCQDQYITHHCIIRYNVLIRLADS 74
           C +C+KRF +  +++ H     N+  + ADS
Sbjct: 332 CPICSKRFMRSDHLSKHVKTHNNITPKKADS 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,252,529
Number of Sequences: 59808
Number of extensions: 515840
Number of successful extensions: 1564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)