Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30833
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical ...    95   4e-20
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z81486-13|CAE47465.1|  611|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z81486-12|CAC42272.1|  585|Caenorhabditis elegans Hypothetical p...    28   5.4  
AY221631-1|AAP97492.1|  611|Caenorhabditis elegans muscarinic ac...    28   5.4  
AL034391-3|CAE47471.1|  611|Caenorhabditis elegans Hypothetical ...    28   5.4  
AL034391-2|CAA22301.2|  585|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF139093-1|AAD48771.1|  585|Caenorhabditis elegans muscarinic ac...    28   5.4  
U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical
           protein Y45F10A.4 protein.
          Length = 378

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 48/85 (56%), Positives = 59/85 (69%), Gaps = 4/85 (4%)
 Frame = +1

Query: 265 DSMSRLNRIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAA 444
           + MSRLNR AA+L+HKY+AH STDVTGFGLLGHA+NLA  QK  + F+I  LP+I  M  
Sbjct: 237 EQMSRLNRNAAKLLHKYDAHSSTDVTGFGLLGHAENLARVQKQPMEFIIEKLPIIEYMDE 296

Query: 445 VAKAC----GNMFQLLQGHAPETSG 507
           +A       G  F+L QG + ETSG
Sbjct: 297 IADKMIAKGGEGFKLYQGTSAETSG 321



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 36/62 (58%), Positives = 47/62 (75%)
 Frame = +2

Query: 2   EAGTSVTGGQTVINPWCTIGGVATTICQPNEYIVPDNAVMGDVLVLTKPLGTQVAVNAHQ 181
           EAGT + GGQTV  PW  +GGVAT++   +E I  D AV GDVL+LTKP+G QVAVN+++
Sbjct: 150 EAGTKIRGGQTVRCPWLLLGGVATSVAHESEIIKVDQAVPGDVLILTKPIGGQVAVNSYE 209

Query: 182 WL 187
           W+
Sbjct: 210 WI 211



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 510 LLICLPREQAAAYCKDIEKQEGYQAWIIGIV---EKGNRTARIIDKPRVIEVPA 662
           LLI +  E A  Y  ++   +   AWIIG V      +  ARI+     I VP+
Sbjct: 323 LLIAMSEENAKKYIAELSSLDNAPAWIIGKVTAKTTDSSIARILPDAVRISVPS 376


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 452 KLVGTCFNCYKDTLQRHLVTSNLSATRTGCCVL*RY*E 565
           +++GTC NC  D+ Q      +  A   GCCV  +Y E
Sbjct: 375 QVIGTCHNCQSDSQQGTSQNRDNLAGMKGCCVKDQYHE 412


>Z81486-13|CAE47465.1|  611|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1b protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 103 YNVLIRLADSGSNP----TNCAPGVDDSLPTSDR 14
           Y VLI L D GS P    ++C P +D+ + T +R
Sbjct: 435 YTVLIELNDEGSRPSVRLSSCEPYLDEPISTRNR 468


>Z81486-12|CAC42272.1|  585|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1a protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 103 YNVLIRLADSGSNP----TNCAPGVDDSLPTSDR 14
           Y VLI L D GS P    ++C P +D+ + T +R
Sbjct: 409 YTVLIELNDEGSRPSVRLSSCEPYLDEPISTRNR 442


>AY221631-1|AAP97492.1|  611|Caenorhabditis elegans muscarinic
           acetylcholine receptorlarge isoform protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 103 YNVLIRLADSGSNP----TNCAPGVDDSLPTSDR 14
           Y VLI L D GS P    ++C P +D+ + T +R
Sbjct: 435 YTVLIELNDEGSRPSVRLSSCEPYLDEPISTRNR 468


>AL034391-3|CAE47471.1|  611|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1b protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 103 YNVLIRLADSGSNP----TNCAPGVDDSLPTSDR 14
           Y VLI L D GS P    ++C P +D+ + T +R
Sbjct: 435 YTVLIELNDEGSRPSVRLSSCEPYLDEPISTRNR 468


>AL034391-2|CAA22301.2|  585|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1a protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 103 YNVLIRLADSGSNP----TNCAPGVDDSLPTSDR 14
           Y VLI L D GS P    ++C P +D+ + T +R
Sbjct: 409 YTVLIELNDEGSRPSVRLSSCEPYLDEPISTRNR 442


>AF139093-1|AAD48771.1|  585|Caenorhabditis elegans muscarinic
           acetylcholine receptor protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 103 YNVLIRLADSGSNP----TNCAPGVDDSLPTSDR 14
           Y VLI L D GS P    ++C P +D+ + T +R
Sbjct: 409 YTVLIELNDEGSRPSVRLSSCEPYLDEPISTRNR 442


>U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical
           protein B0507.7 protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +1

Query: 262 MDSMSRLNRIAARLMHKYNAHGSTDVTGF-GLLGHAQNLASHQKNEVSFVIHNLPVIAKM 438
           MD +    R+  +   ++NA GSTDV  F  L+G         + E+S +I  L +  + 
Sbjct: 253 MDDLLSALRVFYQHATEFNADGSTDVQVFTQLIGEVIGTVEELRTEMSELISTLEMFEEE 312

Query: 439 AAVAKACG 462
              A   G
Sbjct: 313 GCTATEQG 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,104,545
Number of Sequences: 27780
Number of extensions: 386624
Number of successful extensions: 1145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)