Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30833
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11300.1 68417.m01826 expressed protein                             30   1.7  
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f...    28   6.7  

>At4g11300.1 68417.m01826 expressed protein
          Length = 371

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 174 AFTATCV-PRGFVKTNTSPITALSGTMYSLGWQIVVATPPIVHQGLMTVCP 25
           A TA  V PRG      SP+  +S  M  + W +VVA P     GLM   P
Sbjct: 218 AMTANLVAPRG---GEASPMYIMSSVMVMVMWTLVVAVPCQTSNGLMVHVP 265


>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
           factor (HB-8) identical to HD-zip transcription factor
           (athb-8) (GI:7270235) [Arabidopsis thaliana]
          Length = 833

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 565 FSISLQYAAACSRGRQIRSHQMSLERVLVAIETCSHKLSLLLP 437
           F + +Q   A    + +RS   S++RV +A+   SH+LS L P
Sbjct: 640 FEMHMQENVASMARQYVRSVIASVQRVALALSPSSHQLSGLRP 682


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,764
Number of Sequences: 28952
Number of extensions: 354419
Number of successful extensions: 907
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)