Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30832
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   6.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.7  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   8.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   8.8  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 151 LNLRFPMTVSKIQFFLLVLKFE 86
           LN   P+T+SKI F L  L+F+
Sbjct: 110 LNYDTPLTISKISFLLQQLEFK 131


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -1

Query: 247  VDTPKSFFTLKIFSITTNISLVSYSSRFKRENLNLR-FPMTVSKIQFFLLVLKFEYFDYK 71
            + + +S F++ +  I T  S +  +  F    +N+  FP  V  ++ ++ VLK ++ ++ 
Sbjct: 882  ITSAESLFSMVLPLIFTEFSPIREAVVFAIGCINVNAFPQLVRSLKPYISVLKQDHQEFI 941

Query: 70   SSDLNF 53
             + LNF
Sbjct: 942  FAGLNF 947


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 121 KIQFFLLVLKFEYFDYKSSDLNFYLNFKNVANSYKHFY 8
           ++   L +LK  Y  Y   +    LN K+V+ S+K+F+
Sbjct: 461 RLNLDLYILKQFYCHYLDRNRKPPLNIKSVSESFKNFW 498


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 471 VNGNMICSLNKKYIS*KLFTFTSAAFRIQNHCDSNQLKSIKI 346
           +N   + S   +YI  K  + T  A    N+ DSN+ K IK+
Sbjct: 321 INIKTLSSTTPEYILLKKLSETIVALGQYNYLDSNRRKCIKL 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,877
Number of Sequences: 5004
Number of extensions: 43244
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)