Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30832
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10128| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_5904| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)                 28   7.0  
SB_40434| Best HMM Match : ABC2_membrane (HMM E-Value=0.0087)          28   7.0  
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_10128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 119 FADRHGESQI*ILSFEPTGIRYKRDI 196
           FADRH +S   +LS+ P G++  RD+
Sbjct: 183 FADRHHKSATFLLSYAPNGLKLHRDV 208


>SB_5904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -1

Query: 214 IFSITTNISLVSYSSRFKRENLNLRFPMTVSKIQFFLLVLKFEYFDYKSSDLNF 53
           +F  T + S+  +SS      LNLR P  V+   FF+ V+   Y D K +D NF
Sbjct: 16  VFQGTVDESMAYFSS------LNLRMPANVNPADFFMDVIGGLY-DGKDADKNF 62


>SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)
          Length = 788

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 163 KRENLNLRFPMTVSKIQFFLLVLKFEYFDYKS 68
           KR+ LN R P  V K+  FL  L++E   Y S
Sbjct: 548 KRKTLNFRLPSVVQKLATFL--LQYEQISYHS 577


>SB_40434| Best HMM Match : ABC2_membrane (HMM E-Value=0.0087)
          Length = 405

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -1

Query: 214 IFSITTNISLVSYSSRFKRENLNLRFPMTVSKIQFFLLVLKFEYFDYKSSDLNF 53
           +F  T + S+  +SS      LNLR P  V+   FF+ V+   Y D K +D NF
Sbjct: 54  VFQGTVDESMAYFSS------LNLRMPANVNPADFFMDVIGGLY-DGKDADKNF 100


>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2362

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 586 PLDRSHGKSTDSSLSGKFRRIHLKLTTFNKVKLVK 482
           PL  S G   DSS+   FR +  KLT  + V  +K
Sbjct: 18  PLPASQGDEVDSSVDSDFRMVMRKLTKRDAVTKLK 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,749
Number of Sequences: 59808
Number of extensions: 276956
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)