Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30832
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine r...    31   0.88 
Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine rec...    29   3.5  
U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    27   8.2  

>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
           protein F46C3.3 protein.
          Length = 2557

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 410 NVNNFYEIYFLFSEQIMLPFTIKALDEFYFI 502
           N N FYE+Y   S+++   F IK L +F++I
Sbjct: 182 NFNIFYEVYHGLSDEMKAKFGIKGLQKFFYI 212


>AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein98 protein.
          Length = 365

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 139 FPMTVSKIQFFLLVLKFEYFDYKSSDLNFYLNFKNVANSYKHF 11
           FP + SK+  + L+L  E F   S  L +YL+F  +  +  HF
Sbjct: 15  FPNSDSKMALYQLMLTLEKFARPSLKLQYYLSFFGIVLTILHF 57


>Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = -1

Query: 250 YVDTPKS---FFTLKIFSITTNISLVSYSSRFKRENLNLRFPMTVSKIQFFLLVLKFEYF 80
           + D P S   +  L +F  +   +++S   + K EN +    M   +I     +  F +F
Sbjct: 14  FYDHPSSHNLYIYLHLFVQSNTTTIISNFRKQKHENHSSEVSMHQHRISKKKRIW-FTHF 72

Query: 79  DYKSSDLNFYLNFKNVANSYKHFYD 5
           D   S  NF L   N+  SY+  YD
Sbjct: 73  DSLISSFNFTLLIGNLLRSYRKTYD 97


>Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = -1

Query: 250 YVDTPKS---FFTLKIFSITTNISLVSYSSRFKRENLNLRFPMTVSKIQFFLLVLKFEYF 80
           + D P S   +  L +F  +   +++S   + K EN +    M   +I     +  F +F
Sbjct: 14  FYDHPSSHNLYIYLHLFVQSNTTTIISNFRKQKHENHSSEVSMHQHRISKKKRIW-FTHF 72

Query: 79  DYKSSDLNFYLNFKNVANSYKHFYD 5
           D   S  NF L   N+  SY+  YD
Sbjct: 73  DSLISSFNFTLLIGNLLRSYRKTYD 97


>U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein97 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 139 FPMTVSKIQFFLLVLKFEYFDYKSSDLNFYLNFKNVANSYKHFY 8
           FP   +K++ + ++L  E F   S    FYL+F  +  +  H Y
Sbjct: 15  FPSHANKLELYRILLLLEQFARPSLWFQFYLSFFGILLTIFHLY 58


>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = -1

Query: 337 VIVLQWTFLQRTNHIAFSFELNF**VRHNYVDTPKSFFTLKIFSITTN---ISLVSYSSR 167
           +IV+ +  L RT    +    N   V  + VD     F + +F    N   ISL++   +
Sbjct: 94  MIVIGFVLLARTIADVYMIT-NATSVEASIVDRSPIMFAMSVFKYFLNLPAISLINALLK 152

Query: 166 FKRENLNLRFPMTVSKIQFFLLVLKFEYFDYKSSD 62
           F    L LRF   ++K  +   +  F Y+   + D
Sbjct: 153 FSLSELKLRFRENLTKYLYGKYLGGFTYYQISNLD 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,308,102
Number of Sequences: 27780
Number of extensions: 231493
Number of successful extensions: 479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)