Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30832
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    29   0.037
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 29.1 bits (62), Expect = 0.037
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 88  EYFDYKSSDLNFYLNFKNVANSYKH 14
           +YF+   ++LNF LN+ N   +YKH
Sbjct: 47  KYFEQTLNELNFNLNYVNKGVTYKH 71


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 79  DYKSSDLNFYLNFKNVANSYKHFYDS 2
           +YK S+ N Y N  N  N+Y + Y++
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYNNNYNN 346


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 226 FTLKIFSITTNISLVSYSSRFKRENLN 146
           +TL IF +T++  L  Y  R +  N+N
Sbjct: 161 YTLNIFDLTSDKLLRQYRLRAEDINMN 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,318
Number of Sequences: 438
Number of extensions: 3068
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)