Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30830
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 101 6e-23
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 98 1e-21
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 31 0.097
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 29 0.39
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 28 0.91
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 4.8
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 26 4.8
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 6.4
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 8.5
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 8.5
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 101 bits (243), Expect = 6e-23
Identities = 49/91 (53%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLA--RHMKKPTREGLIAVV 351
L++ KLYR+LARRT+++FN+ +L+RLF S+ NRPPIS+S++A K + EG V+
Sbjct: 25 LKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVI 84
Query: 350 VGTVTNDVRLYKIPKMTVAALHVTEKARARI 258
VGTVT+D RL +PK++VAAL T+ ARARI
Sbjct: 85 VGTVTDDERLLTVPKLSVAALRFTKSARARI 115
Score = 78.2 bits (184), Expect = 9e-16
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGGE+LT DQLALRAPTG TVL++G+++AREA RHFG P H PYVR++G E
Sbjct: 118 AGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFE 174
Query: 78 KARPSRRA 55
+AR R++
Sbjct: 175 RARGRRKS 182
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -1
Query: 589 IDITHNHDRKVRRTEVKPQDIYLRLLV 509
IDI +H RK +R++ +++YL+LLV
Sbjct: 3 IDIERHHVRKSQRSKPASENVYLKLLV 29
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 97.9 bits (233), Expect = 1e-21
Identities = 46/91 (50%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLA--RHMKKPTREGLIAVV 351
L++ KLYR+LARRT+++FN+ +L+RLF S+ NRPPIS+S++A K + + VV
Sbjct: 25 LKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVV 84
Query: 350 VGTVTNDVRLYKIPKMTVAALHVTEKARARI 258
VGTVT+D R+ +PK+++AAL T+ ARARI
Sbjct: 85 VGTVTDDERMLTVPKLSIAALRFTKSARARI 115
Score = 79.4 bits (187), Expect = 4e-16
Identities = 40/68 (58%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGGE+LT DQLALRAPTG TVLV+G+++AREA RHFG P H PYVR++G E
Sbjct: 118 AGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFE 174
Query: 78 KARPSRRA 55
+AR R++
Sbjct: 175 RARGRRKS 182
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -1
Query: 589 IDITHNHDRKVRRTEVKPQDIYLRLLV 509
IDI +H +K +R++ +++YL+LLV
Sbjct: 3 IDIERHHVKKSQRSKPASENVYLKLLV 29
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 31.5 bits (68), Expect = 0.097
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -2
Query: 351 SGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFAAGGEILT-FDQLALRAPTGKKTVLVQG 175
SG+ H TV DT D C+S +++ A+ L+ FD LR P KT +
Sbjct: 190 SGEYHLRHTTVADTTDSSFCTSISQRNELFAVASQDSSLSVFDVRYLRTPMLTKT-SSRP 248
Query: 174 QRNAREAVRHFGPAPGAP 121
N HF P G P
Sbjct: 249 DPNGSIRSCHFTPPNGGP 266
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 29.5 bits (63), Expect = 0.39
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -3
Query: 194 RQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRDMKKQGPVVVLM 51
R +YK SE ++ Q + +LQ+ ALT N + + + G +VVL+
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPNLLARTIETVEGGGIVVLL 151
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 28.3 bits (60), Expect = 0.91
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 225 DQK*EFLLQQQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV---- 392
DQ LL Q+ T +FG++ + L +SH CP GN ++L V
Sbjct: 1089 DQFDRLLLLQKGGKTVYFGDIGEHSKTLLNYFESHGAVHCPD-DGNP--AEYILDVIGAG 1145
Query: 393 ARQTRHRDWWPV 428
A T +RDW V
Sbjct: 1146 ATATTNRDWHEV 1157
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 298 WLLFMLPKKLVHAFCCWRR--NSYF*SAGSS 212
WLLF+L ++ +H F C R N S GSS
Sbjct: 984 WLLFLLRQQDIHYFICGIRLLNQSICSLGSS 1014
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 583 ITHNHDRKVRRTEVKPQDIYL--RLLVSFTDTWPDVQMPNSIRSFYAGS 443
+++ HDRK+ ++KP +I L + V D ++ NS+ + G+
Sbjct: 194 LSYLHDRKIIHRDIKPSNILLTSKGQVKLCDFGVSGELVNSLAGTFTGT 242
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 79 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKN 240
F+S G IG ++ C++ I+++ Y Y LL T S LI +++
Sbjct: 631 FLSFGITIGSALYGWMDKDATDADTCMSIIAVSPYWYILLIPIFTLSLLIVTQS 684
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -2
Query: 228 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 133
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3
Query: 365 LIAVVVGTVTNDVRLYKI 312
L+ +VV +TNDVRL++I
Sbjct: 694 LLKMVVPLITNDVRLWRI 711
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,218
Number of Sequences: 5004
Number of extensions: 52721
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -