Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30830
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 106 1e-23
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 103 8e-23
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 103 8e-23
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 30 1.2
10_08_0461 - 18113348-18113389,18113683-18114231 30 1.6
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 29 2.2
01_06_0579 + 30379243-30379617 29 2.2
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 2.8
09_02_0181 - 5425833-5426527,5426667-5429397 29 3.8
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590... 28 6.6
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 27 8.7
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 106 bits (255), Expect = 1e-23
Identities = 52/89 (58%), Positives = 68/89 (76%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
L++ KLYR+L RRT + FN ++LRRLFMS+ NRPP+S+ RL R M+ +E IAV+VG
Sbjct: 26 LKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRFME--GKENQIAVIVG 83
Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
TVT+D R+Y++P M VAAL TE ARARI
Sbjct: 84 TVTDDKRVYEVPAMKVAALRFTETARARI 112
Score = 82.6 bits (195), Expect = 2e-16
Identities = 47/84 (55%), Positives = 55/84 (65%), Gaps = 19/84 (22%)
Frame = -2
Query: 249 GGEILTFDQLALRAPTGKKT-----------------VLVQGQRNAREAVRHFGPAPGAP 121
GGE LTFDQLALRAP G+ T VL++G +NAREAV+HFGPAPG P
Sbjct: 116 GGECLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVP 175
Query: 120 RSHTKPYVRTKGH--EKARPSRRA 55
S+TKPYVR+KG EKAR R +
Sbjct: 176 HSNTKPYVRSKGRKFEKARGRRNS 199
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 103 bits (248), Expect = 8e-23
Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 6/95 (6%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHM--KKPTREGL---- 363
L++ KLYR+L RRT + FN ++L+RLFMS+ NRPP+S+ RL R M K P R +
Sbjct: 26 LKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRFMEGKVPDRHAISGDQ 85
Query: 362 IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARI 258
IAV+VGTVT+D R+Y++P M VAAL TE ARARI
Sbjct: 86 IAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120
Score = 101 bits (242), Expect = 4e-22
Identities = 48/68 (70%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG E
Sbjct: 123 AGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFE 182
Query: 78 KARPSRRA 55
KAR R +
Sbjct: 183 KARGRRNS 190
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 103 bits (248), Expect = 8e-23
Identities = 51/89 (57%), Positives = 67/89 (75%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
L++ KLYR+L RRT + FN ++L+RLFMS+ NRPP+S+ RLA+ M + E IAV+VG
Sbjct: 26 LKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKFM-EGKEENNIAVIVG 84
Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
TVT+D R+ +IPKM V AL TE ARARI
Sbjct: 85 TVTDDKRIQEIPKMKVTALRFTETARARI 113
Score = 102 bits (244), Expect = 3e-22
Identities = 49/68 (72%), Positives = 55/68 (80%), Gaps = 2/68 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGGE LTFDQLALRAP G+ TVL++G +NAREAVRHFG APG P SHTKPYVR+KG E
Sbjct: 116 AGGECLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFE 175
Query: 78 KARPSRRA 55
KAR R +
Sbjct: 176 KARGRRNS 183
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = -2
Query: 312 TEDDGGCSSCYRKSSCTHFAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 133
T+ C++C +S C HFA+ +LAL +P K+ V + Q + +
Sbjct: 1482 TKSKPNCNACPMRSECKHFASA---FASARLALPSPQDKRLVNMSNQFDFQNGT------ 1532
Query: 132 PGAPRSHTKPYVRTKGHEKAR 70
P H+ P ++ +G AR
Sbjct: 1533 --MPTPHSTPLLQLEGSIHAR 1551
>10_08_0461 - 18113348-18113389,18113683-18114231
Length = 196
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -2
Query: 351 SGDSHK*RETVQDTEDDGGC-SSCYRKSSCTHFAAGGEILTFDQLALRAPTGKKTVLVQG 175
SG S V D + GC C + A GG + +++L L A G+ V+
Sbjct: 118 SGRSSVVARVVDDCDSVNGCREEDGFAPPCRNNAVGGSPVVWEKLGLNASVGEFEVVWSC 177
Query: 174 QRNAREAVR 148
+NA+E +R
Sbjct: 178 LKNAKETLR 186
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 312 TEDDGGCSSCYRKSSCTHFAAGGEILTFDQLALRAPTGKKTVLVQGQ 172
T+ C++C +S C HFA+ +LAL +P K+ V + Q
Sbjct: 1488 TKSKPNCNACPMRSECRHFASA---FASARLALPSPQDKRLVNLSNQ 1531
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 317 CTVSRHL*LSPLPRQSNPHELASS 388
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 346 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 450
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = -2
Query: 270 SCTHFAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRT 91
+C AAGGE + A+ A G L PAP PR+ + R
Sbjct: 1048 ACPAGAAGGETGSATD-AVWAAGGATRALASAAATRVGVAAATAPAPALPRAPARCRCRM 1106
Query: 90 KGHEKARPSRRA 55
KARP+ RA
Sbjct: 1107 ACRRKARPAGRA 1118
>04_04_1385 -
33157557-33157655,33157752-33158201,33158864-33159004,
33159058-33159329,33160371-33160821
Length = 470
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 321 VQDTEDDGGCSSCYRKSSCTHFAAGGEILTFDQLAL 214
V + +D GGC SC+ S+ +I+T D ++L
Sbjct: 141 VAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISL 176
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/75 (26%), Positives = 29/75 (38%)
Frame = +3
Query: 123 VLLEQGQSDALPHEHFADLVPVLSSCQSEHEEPADQK*EFLLQQQNACTSFFGNMKSSHR 302
VL +G LP + V S E E L ++ SF + SS+R
Sbjct: 54 VLALRGAEVILPARTLESGMKVKQSLAEEIPSSKLHVMEMDLSSLDSVRSFAKSFNSSYR 113
Query: 303 HLRYLVQSHVICDCP 347
HL L+ + + CP
Sbjct: 114 HLNVLINNAGVMSCP 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,230,834
Number of Sequences: 37544
Number of extensions: 389595
Number of successful extensions: 1122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -