Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30830
(601 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 1e-22
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 31 0.94
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_2504| Best HMM Match : Profilin (HMM E-Value=2.9) 28 5.0
SB_2011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11) 27 8.8
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 8.8
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 103 bits (247), Expect = 1e-22
Identities = 47/89 (52%), Positives = 67/89 (75%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
+ + KLYR+L+RRTNAKFNQIV++RL MSR RPP+S++RL R MK + I VVVG
Sbjct: 132 IRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSLARLVRKMKASGHKDKICVVVG 191
Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
++T+D R++++P + + AL +E ARARI
Sbjct: 192 SITDDKRIFEVPALKICALRFSETARARI 220
Score = 76.6 bits (180), Expect = 1e-14
Identities = 40/66 (60%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTK-----PYVRTK 88
AGGEILTFDQLALRAP G+ TVL+QG R AREA RH G APG P S T Y+ T
Sbjct: 223 AGGEILTFDQLALRAPLGQNTVLLQGPRKAREAERHMGLAPGVPHSDTNWCGDLDYIGTD 282
Query: 87 GHEKAR 70
G + R
Sbjct: 283 GDAQCR 288
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -1
Query: 598 TLF--IDITHNHDRKVRRTEVKPQDIYLRLLV 509
TLF IDI H +K R E Q++Y+RLLV
Sbjct: 105 TLFHGIDIEKKHPKKNYRREPVSQNVYIRLLV 136
>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 998
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 220 QLIKSKNFSSSSKMRARAFSVT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 375
QL + S K +T R T++FGIL L + TT IKP R
Sbjct: 596 QLTSTSRLKSLYKDHCWDMLITLRPITILFGILALLLNLFVFVTTVGIKPLR 647
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Frame = +1
Query: 55 STTTGPCFFMSLGANIGFSVRARCSWSRAKVTHCLTSI-SLTLYQYCLLASRSTKSQLIK 231
ST++ P F S+ N S A + V+ TS+ + ++ + + + +T + L K
Sbjct: 950 STSSTPSFESSMTTNSTTSTPAEAVPISSSVSSTTTSVLTSSMESFSMATTSTTTTPLFK 1009
Query: 232 SK-NFSSSSKMRARAFSVT*RAATVIFGILYSLTSFVTVPTT-TAIKPS 372
S +S++ A A +++ +L S F ++ TT T KPS
Sbjct: 1010 SSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSSKEFFSMTTTSTTSKPS 1058
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 246 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 115
GE+++ D++ +A + Q N EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657
>SB_2504| Best HMM Match : Profilin (HMM E-Value=2.9)
Length = 191
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -3
Query: 518 VTCKLYRYLARRT--NAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
V C+ Y+ L N + NQI +RLF IN PP ++ +A T L + G
Sbjct: 76 VQCQTYKELRNSVIQNLQRNQITQKRLFNLLIN-PPTQLAGIAASENNKTVRHLGRHLTG 134
Query: 344 TVTND 330
ND
Sbjct: 135 HAKND 139
>SB_2011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 267 CTHFAAGGEILTFDQLALRA-PTGKKT 190
C H A E LTFD LALR+ P K+T
Sbjct: 61 CNHRMATLETLTFDNLALRSLPIDKET 87
>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 212 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 87
V+R R+ W K +++V CV LA++ L + +F R
Sbjct: 34 VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75
>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
Length = 878
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 46 LDISTTTGPCFFMSLGANIGFSVRARCSWSRAKVTHCLTSI 168
L IS +TG + MSL + FSV+ +W R + H +
Sbjct: 547 LYISDSTGLSYSMSLERVLYFSVKTGSTWLRHYIDHSFVDL 587
>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 212 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 87
V+R R+ W K +++V CV LA++ L + +F R
Sbjct: 34 VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75
>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 785
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 348 HYHGNQTLTSWLLHVARQTRHRDWW 422
HYH N+ L +L ++R WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 127 SWSRAKVTHCLTSISLTLYQY 189
+W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,620,129
Number of Sequences: 59808
Number of extensions: 423729
Number of successful extensions: 1053
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -