Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30830
(601 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 120 3e-27
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 120 3e-27
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 120 3e-27
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 120 3e-27
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 120 3e-27
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 118 1e-26
Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7) prot... 30 5.4
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 30 5.4
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 30 5.4
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 120 bits (290), Expect = 3e-27
Identities = 56/89 (62%), Positives = 72/89 (80%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
L + KLYR+LARRTN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVG
Sbjct: 25 LRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVG 84
Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
T+T+DVR+ ++PK+ V AL VT +AR+RI
Sbjct: 85 TITDDVRVQEVPKLKVCALRVTSRARSRI 113
Score = 88.6 bits (210), Expect = 1e-17
Identities = 45/69 (65%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E
Sbjct: 116 AGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175
Query: 78 KARPSRRAN 52
+AR RRA+
Sbjct: 176 RAR-GRRAS 183
Score = 46.0 bits (104), Expect = 1e-04
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1
Query: 589 IDITHNHDRKVRRTEVKPQDIYLRLLV 509
+DI HN DRKVRR E K QDIYLRLLV
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLV 29
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 120 bits (290), Expect = 3e-27
Identities = 56/89 (62%), Positives = 72/89 (80%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
L + KLYR+LARRTN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVG
Sbjct: 2 LRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVG 61
Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
T+T+DVR+ ++PK+ V AL VT +AR+RI
Sbjct: 62 TITDDVRVQEVPKLKVCALRVTSRARSRI 90
Score = 88.6 bits (210), Expect = 1e-17
Identities = 45/69 (65%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E
Sbjct: 93 AGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 152
Query: 78 KARPSRRAN 52
+AR RRA+
Sbjct: 153 RAR-GRRAS 160
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 120 bits (290), Expect = 3e-27
Identities = 56/89 (62%), Positives = 72/89 (80%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
L + KLYR+LARRTN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVG
Sbjct: 25 LRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVG 84
Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
T+T+DVR+ ++PK+ V AL VT +AR+RI
Sbjct: 85 TITDDVRVQEVPKLKVCALRVTSRARSRI 113
Score = 88.6 bits (210), Expect = 1e-17
Identities = 45/69 (65%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E
Sbjct: 116 AGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175
Query: 78 KARPSRRAN 52
+AR RRA+
Sbjct: 176 RAR-GRRAS 183
Score = 46.0 bits (104), Expect = 1e-04
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1
Query: 589 IDITHNHDRKVRRTEVKPQDIYLRLLV 509
+DI HN DRKVRR E K QDIYLRLLV
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLV 29
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 120 bits (290), Expect = 3e-27
Identities = 56/89 (62%), Positives = 72/89 (80%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
L + KLYR+LARRTN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVG
Sbjct: 25 LRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVG 84
Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
T+T+DVR+ ++PK+ V AL VT +AR+RI
Sbjct: 85 TITDDVRVQEVPKLKVCALRVTSRARSRI 113
Score = 88.6 bits (210), Expect = 1e-17
Identities = 45/69 (65%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E
Sbjct: 116 AGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175
Query: 78 KARPSRRAN 52
+AR RRA+
Sbjct: 176 RAR-GRRAS 183
Score = 46.0 bits (104), Expect = 1e-04
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1
Query: 589 IDITHNHDRKVRRTEVKPQDIYLRLLV 509
+DI HN DRKVRR E K QDIYLRLLV
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLV 29
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 120 bits (290), Expect = 3e-27
Identities = 56/89 (62%), Positives = 72/89 (80%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
L + KLYR+LARRTN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVG
Sbjct: 25 LRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVG 84
Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
T+T+DVR+ ++PK+ V AL VT +AR+RI
Sbjct: 85 TITDDVRVQEVPKLKVCALRVTSRARSRI 113
Score = 88.6 bits (210), Expect = 1e-17
Identities = 45/69 (65%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E
Sbjct: 116 AGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175
Query: 78 KARPSRRAN 52
+AR RRA+
Sbjct: 176 RAR-GRRAS 183
Score = 46.0 bits (104), Expect = 1e-04
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1
Query: 589 IDITHNHDRKVRRTEVKPQDIYLRLLV 509
+DI HN DRKVRR E K QDIYLRLLV
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLV 29
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 118 bits (285), Expect = 1e-26
Identities = 55/89 (61%), Positives = 71/89 (79%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
L + KLYR+LARRTN+ FNQ+VL+RLFMSR NRPP+ +SR+ R MK P RE AVVVG
Sbjct: 25 LRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLCLSRMIRKMKLPGRENKTAVVVG 84
Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
T+T+DVR+ ++PK+ V AL VT +AR+RI
Sbjct: 85 TITDDVRVQEVPKLKVCALRVTSRARSRI 113
Score = 88.6 bits (210), Expect = 1e-17
Identities = 45/69 (65%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E
Sbjct: 116 AGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175
Query: 78 KARPSRRAN 52
+AR RRA+
Sbjct: 176 RAR-GRRAS 183
Score = 46.0 bits (104), Expect = 1e-04
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -1
Query: 589 IDITHNHDRKVRRTEVKPQDIYLRLLV 509
+DI HN DRKVRR E K QDIYLRLLV
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLV 29
>Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7)
protein.
Length = 180
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 270 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 392
+F N+KSS +R + C H Q SWLL+V
Sbjct: 138 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 178
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 270 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 392
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 270 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 392
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,498,356
Number of Sequences: 237096
Number of extensions: 2113202
Number of successful extensions: 5095
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5095
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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