Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30830
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   104   4e-23
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    31   0.83 
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    31   0.83 

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  104 bits (250), Expect = 4e-23
 Identities = 52/89 (58%), Positives = 66/89 (74%)
 Frame = -3

Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
           L +  KLY +LARRT  KFN IVL+RL MSR NR P+S+++LAR ++K   E    V + 
Sbjct: 25  LRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLS 84

Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
           TVT+D RLY +PK++VAALHVTE ARARI
Sbjct: 85  TVTDDARLYTVPKISVAALHVTEGARARI 113



 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 2/70 (2%)
 Frame = -2

Query: 255 AAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH-- 82
           AAGGEI+T DQLAL++P G+ TV +QG R+AREA +HFGPAPG P SHTKPYVR+KG   
Sbjct: 115 AAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRKF 174

Query: 81  EKARPSRRAN 52
           E+AR  RRA+
Sbjct: 175 ERAR-GRRAS 183



 Score = 35.9 bits (79), Expect = 0.022
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = -1

Query: 589 IDITHNHDRKVRRTEVKPQDIYLRLL 512
           IDI H HDR  RRT  K ++ YLRLL
Sbjct: 3   IDINHKHDRVARRTAPKSENPYLRLL 28


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 471 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*RETVQDTED 304
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R     T+D
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 172


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 471 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*RETVQDTED 304
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R     T+D
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,432,281
Number of Sequences: 27780
Number of extensions: 321548
Number of successful extensions: 848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)