Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30830
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.14 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.43 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.75 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.0  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   9.2  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 262 AFCCWRRNSYF*SAGSSCSDWQEDSTGTRSAKCS 161
           AF C        SAG+SC    E    TRSA C+
Sbjct: 14  AFLCLASTILSESAGTSCKWLSEGGNDTRSADCT 47


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 489 QTYKCQIQSDRSTPALYEPYQPA 421
           QT + Q+  DR++P  Y  Y PA
Sbjct: 410 QTLRPQVSPDRTSPMEYRLYNPA 432


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = +1

Query: 160 TSISLTLYQYCLLASRSTKSQLIKSKNFSSSSKMRARAFSVT*RAATVI-----FGILYS 324
           T I++TL  YC+         LI   +     + ++R  S      T+      FG +Y 
Sbjct: 316 TGINVTLKGYCIDMEVPYSGTLI---SHYEDGETKSRFISGIRSEQTIFDVKPEFGSIYF 372

Query: 325 LTSFVTVPTTTA 360
           L ++  VPTTTA
Sbjct: 373 LGNYSLVPTTTA 384


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 292 AATVIFGILYSLTSFVTVPTTTAIKPS 372
           ++ VIFG+L+ L SF+   T T ++P+
Sbjct: 14  SSCVIFGVLFVLFSFLR--TRTKLQPT 38


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 292 AATVIFGILYSLTSFVTVPTTTAIKPS 372
           ++ VIFG+L+ L SF+   T T ++P+
Sbjct: 14  SSCVIFGVLFVLFSFLR--TRTKLQPT 38


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 397 AKRDTEIGGRLIRLIKSRRRTI 462
           AK+ T IGG+ + ++KS  +++
Sbjct: 889 AKKATNIGGKPVAVVKSSAQSL 910


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 169 SLTLYQYCLLASRS 210
           S+T Y YCLL + S
Sbjct: 69  SITCYMYCLLEAFS 82


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 169 SLTLYQYCLLASRS 210
           S+T Y YCLL + S
Sbjct: 69  SITCYMYCLLEAFS 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,205
Number of Sequences: 438
Number of extensions: 3805
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)