Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30830
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 106 1e-23
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 100 8e-22
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 89 2e-18
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 31 0.44
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 29 1.8
At2g04330.1 68415.m00429 hypothetical protein contains Pfam prof... 29 1.8
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof... 29 2.4
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof... 29 2.4
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof... 29 2.4
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 29 3.1
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 28 4.1
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 5.4
At3g44170.1 68416.m04735 hypothetical protein 28 5.4
At2g30590.1 68415.m03727 WRKY family transcription factor 28 5.4
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 27 7.2
At1g31190.1 68414.m03818 inositol monophosphatase family protein... 27 7.2
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 9.5
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 9.5
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro... 27 9.5
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 106 bits (254), Expect = 1e-23
Identities = 50/89 (56%), Positives = 71/89 (79%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
L++T KLYR+L RRTN+KFN ++L+RLFMS++N+ P+S+SRL M +E IAV+VG
Sbjct: 26 LKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM--TGKEDKIAVLVG 83
Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
T+T+D+R+++IP M V AL TE+ARARI
Sbjct: 84 TITDDLRVHEIPAMKVTALRFTERARARI 112
Score = 102 bits (244), Expect = 2e-22
Identities = 47/68 (69%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGGE LTFDQLALRAP G+ TVL++G +N+REAV+HFGPAPG P SH+KPYVR KG E
Sbjct: 115 AGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFE 174
Query: 78 KARPSRRA 55
KAR R++
Sbjct: 175 KARGKRKS 182
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 100 bits (239), Expect = 8e-22
Identities = 47/68 (69%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 79
AGGE LTFDQLALRAP G+ TVL++G +N+REAV+HFGPAPG P S+TKPYVR KG E
Sbjct: 115 AGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFE 174
Query: 78 KARPSRRA 55
KAR R++
Sbjct: 175 KARGKRKS 182
Score = 99.5 bits (237), Expect = 1e-21
Identities = 46/89 (51%), Positives = 69/89 (77%)
Frame = -3
Query: 524 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 345
L++ KLYR+L RR+N+ FN ++L+RLFMS++N+ P+S+SRL M ++ IAV+VG
Sbjct: 26 LKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM--TGKDDKIAVLVG 83
Query: 344 TVTNDVRLYKIPKMTVAALHVTEKARARI 258
T+T+D+R+++IP M V AL TE+ARARI
Sbjct: 84 TITDDLRVHEIPAMKVTALRFTERARARI 112
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 89.0 bits (211), Expect = 2e-18
Identities = 45/69 (65%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Frame = -2
Query: 252 AGGEILTFDQLALRAPT-GKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH-- 82
AGGE LTFDQLAL PT + TVL++G +N REAV+HFGPAPG P SHTKPYVR G
Sbjct: 62 AGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKI 121
Query: 81 EKARPSRRA 55
E AR RR+
Sbjct: 122 EIARGRRRS 130
Score = 70.5 bits (165), Expect = 8e-13
Identities = 34/61 (55%), Positives = 47/61 (77%)
Frame = -3
Query: 440 MSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 261
MS++N+ P+S+SRL R+M ++G IAV+VGTVT+DVR+ +P +TV AL TE ARAR
Sbjct: 1 MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARAR 58
Query: 260 I 258
I
Sbjct: 59 I 59
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 138 GQSDALPHEHFADLVPVLSSCQSEHEEPADQ 230
G S LPH +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 243 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 151
E L FD L L+ P+GK LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At2g04330.1 68415.m00429 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 564
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 313 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRLIKSR 450
+LY LTS + VPT T + S + F RA D I ++ R
Sbjct: 347 VLYFLTSSIVVPTKTGERASPIDDFCVRAASDLTFSFEAIPSLRER 392
>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 662
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 313 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 408
+LY LTS + VPT T + S + F RA D
Sbjct: 377 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 408
>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 301
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 310 GILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 408
G+LY LTS + V T T K S V F RA D
Sbjct: 101 GVLYFLTSIIVVLTKTGEKGSPVDNFCLRAASD 133
>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 705
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 313 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 408
+LY LTS + VPT T + S + F RA D
Sbjct: 440 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 471
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 258 FAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 151
+++ E FD L LR P+GK LV G + + V
Sbjct: 347 YSSRPETPIFDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 231 FDQLALRAPTGKKTVLVQGQRNAREAV 151
FD L LR P+GK LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 467 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 360
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
>At3g44170.1 68416.m04735 hypothetical protein
Length = 155
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 533 LRFNFGAPNFPVVVMSDVNKKC 598
LR NFG NFPV V D + +C
Sbjct: 107 LRSNFGFVNFPVSVHPDTSAQC 128
>At2g30590.1 68415.m03727 WRKY family transcription factor
Length = 380
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 120 AVLLEQGQSDALPHEHFADLVPVLSSCQSEHEEPADQK*EFLLQQQNACTSFFGNMKSSH 299
A LL+ Q +P ++ L PV Q + ++ Q+ E QQQ F +++ H
Sbjct: 132 APLLQLNQQ-TMPPSNYPTLFPVQ---QQQQQQQQQQQQEQQQQQQQQQQQFHERLQAHH 187
Query: 300 RHLRYLVQSH 329
H + +Q H
Sbjct: 188 LHQQQQLQKH 197
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family; similar to
Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
(Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
to mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 285 CYRKSSCTHFAAGGEIL 235
CY+KS+C H G E++
Sbjct: 216 CYQKSTCVHLRGGDEVI 232
>At1g31190.1 68414.m03818 inositol monophosphatase family protein
similar to SP|P29218 Myo-inositol-1(or
4)-monophosphatase (EC 3.1.3.25) (Inositol
monophosphatase) {Homo sapiens}; contains Pfam profile
PF00459: Inositol monophosphatase family; EST
gb|AA597395 comes from this gene
Length = 371
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/86 (23%), Positives = 34/86 (39%)
Frame = +1
Query: 151 HCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSKMRARAFSVT*RAATVIFGILYSLT 330
H I+ + ++Y L LI + + ++M FSV R+ V G+L+
Sbjct: 281 HVALGIAESYWEYRLKPWDMAAGVLIVEEAGGAVTRMDGGKFSVFDRSVLVSNGVLHPKL 340
Query: 331 SFVTVPTTTAIKPSRVGFFMWRAKRD 408
P T +K + F +W D
Sbjct: 341 LERIAPATENLKSKGIDFSLWFKPED 366
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 243 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 151
E FD L L+ P GK LV G + + V
Sbjct: 373 ETTIFDDLCLKIPAGKTVALVGGSGSGKSTV 403
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 243 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 151
E FD LR P+GK LV G + + V
Sbjct: 373 ETSIFDDFCLRVPSGKTVALVGGSGSGKSTV 403
>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
protease identical to SP|P43297 Cysteine proteinase
RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
thiol protease RD21A SP:P43297 from [Arabidopsis
thaliana]
Length = 462
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 321 VQDTEDDGGCSSCYRKSSCTHFAAGGEILTFDQLAL 214
V + +D GGC SC+ S+ +I+T D + L
Sbjct: 149 VAEVKDQGGCGSCWAFSTIGAVEGINQIVTGDLITL 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,537,519
Number of Sequences: 28952
Number of extensions: 294930
Number of successful extensions: 783
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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