Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30829
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   102   2e-22
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   102   2e-22
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   101   3e-22
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    32   0.34 
At3g26800.1 68416.m03352 expressed protein                             28   4.1  
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    28   4.1  
At3g53510.1 68416.m05908 ABC transporter family protein breast c...    28   5.5  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   5.5  
At4g13670.1 68417.m02125 peptidoglycan-binding domain-containing...    27   9.6  
At3g23980.1 68416.m03012 dentin sialophosphoprotein-related cont...    27   9.6  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    27   9.6  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    27   9.6  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  102 bits (244), Expect = 2e-22
 Identities = 49/85 (57%), Positives = 60/85 (70%)
 Frame = +3

Query: 255 KGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELI 434
           +GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KDE++
Sbjct: 89  RGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIV 148

Query: 435 IEGNSLEDVSSSAALIQQSTTVKNK 509
           ++GN +E VS S ALI Q   VK K
Sbjct: 149 LDGNDIELVSRSCALINQKCHVKKK 173



 Score = 87.0 bits (206), Expect = 8e-18
 Identities = 37/89 (41%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
 Frame = +1

Query: 7   MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 171
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 172 EKWFGSKKELAAVRTVCSHVENMIKGVTK 258
           + WFG++K  A++RT  SHV+N+I GVT+
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTR 89



 Score = 35.1 bits (77), Expect = 0.036
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +2

Query: 509 DIRKFLDGLYVSEKTTVVLDD 571
           DIRKFLDG+YVSEK+ +V ++
Sbjct: 174 DIRKFLDGIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  102 bits (244), Expect = 2e-22
 Identities = 49/85 (57%), Positives = 60/85 (70%)
 Frame = +3

Query: 255 KGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELI 434
           +GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KDE++
Sbjct: 89  RGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIV 148

Query: 435 IEGNSLEDVSSSAALIQQSTTVKNK 509
           ++GN +E VS S ALI Q   VK K
Sbjct: 149 LDGNDIELVSRSCALINQKCHVKKK 173



 Score = 87.0 bits (206), Expect = 8e-18
 Identities = 37/89 (41%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
 Frame = +1

Query: 7   MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 171
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 172 EKWFGSKKELAAVRTVCSHVENMIKGVTK 258
           + WFG++K  A++RT  SHV+N+I GVT+
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTR 89



 Score = 35.1 bits (77), Expect = 0.036
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +2

Query: 509 DIRKFLDGLYVSEKTTVVLDD 571
           DIRKFLDG+YVSEK+ +V ++
Sbjct: 174 DIRKFLDGIYVSEKSKIVEEE 194


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  101 bits (243), Expect = 3e-22
 Identities = 50/85 (58%), Positives = 59/85 (69%)
 Frame = +3

Query: 255 KGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELI 434
           +GF Y+MR VYAHFPIN      N  IEIRNFLGEK +R+V+M  GV +V S K KDE+I
Sbjct: 89  QGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEII 148

Query: 435 IEGNSLEDVSSSAALIQQSTTVKNK 509
           +EGN +E VS S ALI Q   VK K
Sbjct: 149 LEGNDIELVSRSCALINQKCHVKKK 173



 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 39/89 (43%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
 Frame = +1

Query: 7   MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 171
           MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 172 EKWFGSKKELAAVRTVCSHVENMIKGVTK 258
           + WFGS+K  A++RT  SHV+N+I GVT+
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQ 89



 Score = 33.9 bits (74), Expect = 0.083
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +2

Query: 509 DIRKFLDGLYVSEKTTVVLDD 571
           DIRKFLDG+YVSEK  + +++
Sbjct: 174 DIRKFLDGIYVSEKGKIAVEE 194


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 22/76 (28%), Positives = 39/76 (51%)
 Frame = +3

Query: 297 PINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 476
           P   V  E  S+ ++ N   +  +R + + P  + V     + +L+IE N      SSA 
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761

Query: 477 LIQQSTTVKNKISESS 524
            +QQST+V+ + SE++
Sbjct: 762 ELQQSTSVRGRYSETA 777


>At3g26800.1 68416.m03352 expressed protein
          Length = 201

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 270 CIGSLCYSFNHVLYM*TDCPHGGKLLF-GSEPFLNLQETRVYHA--NVNSQVFEVPFEN 103
           C    CYSF  + Y+ ++ P GGK LF G+E F  +    V      ++S+  EVP  +
Sbjct: 37  CFVCHCYSFMEI-YVLSNPPVGGKSLFAGNESFFGVCGLAVTSCLDMLSSKTLEVPLRD 94


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +1

Query: 28  QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 171
           +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P L  V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251


>At3g53510.1 68416.m05908 ABC transporter family protein breast
           cancer resistance protein (BCRP), Homo sapiens,
           EMBL:AF098951
          Length = 739

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = -1

Query: 323 TLSGD-TVNGEVSIHSTHLVLEAFVTP---LIMFSTCEQTVLTAASSFLDPNHFSTFRRR 156
           +L GD T+NGEV   S H V+ A+V     L    T E+T++ +A  F  P+  S  +++
Sbjct: 165 SLRGDITLNGEVLESSLHKVISAYVMQDDLLFPMLTVEETLMFSA-EFRLPSSLSKKKKK 223


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -2

Query: 442 PSMISS-SFCFGELTTVTPGAI 380
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


>At4g13670.1 68417.m02125 peptidoglycan-binding domain-containing
           protein similar to spore cortex-lytic enzyme prepeptide
           (GI:1644192) [Bacillus cereus]; contains Pfam PF01471:
           Putative peptidoglycan binding domain; contains Pfam
           PF00684 : DnaJ central domain (4 repeats)
          Length = 387

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 441 GNSLEDVSSSAALIQQSTTVKNKISES 521
           GNS+ D  S+ A + Q    KN+ISES
Sbjct: 104 GNSIPDTISNIAALLQVLKEKNRISES 130


>At3g23980.1 68416.m03012 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 736

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 387 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKISES 521
           PG T  + PKQ D+       +ED++     +Q+       ++ES
Sbjct: 345 PGFTDFSMPKQNDDFTALEQHIEDLTQEKFSLQRDLDASRALAES 389


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 207 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 112
           GGK L   + FLN L+E  ++HAN N+ V  VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 31  KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 141
           +VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,216,586
Number of Sequences: 28952
Number of extensions: 275874
Number of successful extensions: 691
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)