Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30828
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   118   7e-28
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   117   2e-27
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.0  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   1.8  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  118 bits (284), Expect = 7e-28
 Identities = 58/87 (66%), Positives = 66/87 (75%)
 Frame = +1

Query: 4   FTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 183
           FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K 
Sbjct: 111 FTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKG 170

Query: 184 SHSIGLMWWLLAREVLRLRGVLPRTSA 264
             SIGL W+LLAREVLRLRG + RT+A
Sbjct: 171 YKSIGLAWYLLAREVLRLRGNISRTTA 197



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +3

Query: 264 WDVVVXLFFYRDPEESEKDEQQ 329
           W+V+  L+FYRDPEE E++E+Q
Sbjct: 198 WEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  117 bits (281), Expect = 2e-27
 Identities = 56/86 (65%), Positives = 66/86 (76%)
 Frame = +1

Query: 4   FTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 183
           FTN I   +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K 
Sbjct: 110 FTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKG 169

Query: 184 SHSIGLMWWLLAREVLRLRGVLPRTS 261
             SIGL+W+LLAREVLR+RG L R++
Sbjct: 170 RKSIGLIWYLLAREVLRVRGTLSRSA 195



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +3

Query: 264 WDVVVXLFFYRDPEESEKDEQQAK 335
           WDV+  L+FYRDPEE E++E+  K
Sbjct: 197 WDVMPDLYFYRDPEEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +1

Query: 37  PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 216
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 217 AR 222
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 85  TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 195
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 270 HPSAGPGKHTTKPQHFTCQQP-PHQTNRVGRLGV 172
           HPS     H + P  F+ Q P P+    VG +G+
Sbjct: 61  HPSTSSTSHISSPSAFSVQNPNPNDAPFVGNIGL 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,929
Number of Sequences: 5004
Number of extensions: 46988
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)