Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30828
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   115   3e-26
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   115   3e-26
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545...    29   3.3  
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638...    27   9.9  
05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877...    27   9.9  
04_04_0730 + 27618981-27619143,27619237-27619349,27619695-276198...    27   9.9  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  115 bits (277), Expect = 3e-26
 Identities = 52/84 (61%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
 Frame = +1

Query: 4   FTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 183
           FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K 
Sbjct: 112 FTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKG 171

Query: 184 SHSIGLMWWLLAREVLRLRG-VLP 252
             SIG ++WLLAR VL++RG +LP
Sbjct: 172 KQSIGCLFWLLARMVLQMRGTILP 195



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +3

Query: 252 PDQRWDVVVXLFFYRDPEESEKDEQQ 329
           P  +WDV+V LFFYRDPEE+++ E++
Sbjct: 195 PGHKWDVMVDLFFYRDPEEAKEQEEE 220


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  115 bits (277), Expect = 3e-26
 Identities = 52/84 (61%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
 Frame = +1

Query: 4   FTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 183
           FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K 
Sbjct: 112 FTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKG 171

Query: 184 SHSIGLMWWLLAREVLRLRG-VLP 252
            +SIG ++WLLAR VL++RG +LP
Sbjct: 172 RNSIGCLFWLLARMVLQMRGTILP 195



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 17/30 (56%), Positives = 24/30 (80%)
 Frame = +3

Query: 252 PDQRWDVVVXLFFYRDPEESEKDEQQAKEQ 341
           P  +WDV+V LFFYRDPEE+++ E++A  Q
Sbjct: 195 PGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224


>02_05_0941 +
           32953065-32953089,32954252-32954406,32954486-32954587,
           32955089-32955140,32955237-32955349,32955542-32955610,
           32955942-32956049,32956517-32956661,32957245-32957476,
           32957567-32957853,32957951-32958087,32958520-32958667,
           32959464-32959595,32960239-32960367,32960707-32960834,
           32960911-32961075,32961462-32961587,32962088-32962161,
           32962285-32962534,32962875-32963054,32963128-32963361,
           32964771-32964840,32965065-32965177,32965403-32965511,
           32965639-32965688,32965823-32965889,32966131-32966203,
           32966393-32966448,32966729-32966831,32967377-32967458,
           32967717-32967779,32967918-32967977,32968356-32968448,
           32968561-32968623,32968699-32968797
          Length = 1363

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 210 VVGT*SAEASWCASPDQRWDVVVXLFFYRDPEE 308
           +V   S+ + WC S  + W V + +F++ D  E
Sbjct: 480 IVAMTSSRSDWCISRQRTWGVPIPVFYHVDSNE 512


>05_03_0609 -
           16161801-16162848,16163525-16163682,16163806-16163835,
           16164242-16164323,16164599-16164672
          Length = 463

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 216 QQPPHQTNRVGRLGVAWDSNVHKS*WGVCVAQS 118
           + PP Q  RVG  GV      H   WG C  +S
Sbjct: 17  EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49


>05_03_0130 -
           8770354-8770678,8770799-8770992,8771091-8771203,
           8771320-8771482
          Length = 264

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 155 TLLSHATPSLPTLLV*CGGCWHVKC*GFVVCFPGP 259
           ++++  +PS+    + CG C+ VKC G   C   P
Sbjct: 71  SMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNP 105


>04_04_0730 +
           27618981-27619143,27619237-27619349,27619695-27619888,
           27620141-27620465
          Length = 264

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 155 TLLSHATPSLPTLLV*CGGCWHVKC*GFVVCFPGP 259
           ++++  +PS+    + CG C+ VKC G   C   P
Sbjct: 71  SMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNP 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,027,805
Number of Sequences: 37544
Number of extensions: 333990
Number of successful extensions: 925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)