Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30828
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               150   9e-37
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.1  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   1.9  
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 29   3.3  
SB_1060| Best HMM Match : Tropomyosin (HMM E-Value=8.5)                29   3.3  
SB_42040| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   5.8  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  150 bits (364), Expect = 9e-37
 Identities = 69/84 (82%), Positives = 74/84 (88%)
 Frame = +1

Query: 4   FTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 183
           FTNQIQAAFREPRLLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K 
Sbjct: 108 FTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKG 167

Query: 184 SHSIGLMWWLLAREVLRLRGVLPR 255
            HSIGLM+WLLAREVLR+RG + R
Sbjct: 168 IHSIGLMFWLLAREVLRMRGSISR 191



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = +3

Query: 264 WDVVVXLFFYRDPEESEKDEQQA 332
           W+++  L+FYRDPEE+EK+EQ A
Sbjct: 195 WEIMPDLYFYRDPEEAEKEEQAA 217


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 21   SCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 167
            SCI   S+ DCI  C+ PS     F C+ +C         T++C +C+P
Sbjct: 875  SCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 55  LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 150
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 187 HSIGLMWWLLAREVLRLRGVLP 252
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 36  TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 161
           TSSLD + PC+  S H+   +  + C C+  +++    C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_1060| Best HMM Match : Tropomyosin (HMM E-Value=8.5)
          Length = 430

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = -2

Query: 318 PFHFLQGHGRRTNXPQHPSAGPGKHTTKPQHFTCQQPPHQTNRVGRL 178
           P+H     G   N P H +  P     KP H    +P H  N+   L
Sbjct: 51  PYHLNNKPGHLNNMPDHLNNKPDHLNNKPDHLN-NKPDHLNNKPDHL 96



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = -2

Query: 318 PFHFLQGHGRRTNXPQHPSAGPGKHTTKPQHFTCQQPPHQTNRVGRL 178
           P H         N P HP+  P     KP H    QP H  N+   L
Sbjct: 156 PDHLNNKPDHLNNKPDHPNNKPDHLNNKPDHL-YNQPDHLNNKPDHL 201


>SB_42040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = -2

Query: 318 PFHFLQGHGRRTNXPQHPSAGPGKHTTKPQHFTCQQPPHQTNRVGRL 178
           P+H       R N P H +  P     KP H    +P H  N+   L
Sbjct: 229 PYHLNNKPDHRNNKPDHLNNKPEHLNNKPDHLN-NKPDHLNNKPDHL 274


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 31  REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 180
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,399,063
Number of Sequences: 59808
Number of extensions: 388147
Number of successful extensions: 1031
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)