Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30828
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   122   2e-28
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   116   2e-26
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   116   2e-26
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.29 
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    31   0.89 
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot...    28   6.3  
At5g09560.1 68418.m01107 KH domain-containing protein various pr...    27   8.3  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    27   8.3  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  122 bits (295), Expect = 2e-28
 Identities = 55/93 (59%), Positives = 69/93 (74%)
 Frame = +1

Query: 4   FTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 183
           FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K 
Sbjct: 112 FTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKG 171

Query: 184 SHSIGLMWWLLAREVLRLRGVLPRTSAGMLWXI 282
            HSIG ++WLLAR VL++RG +   +AG  W +
Sbjct: 172 KHSIGCLFWLLARMVLQMRGTI---AAGQKWDV 201



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/29 (58%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
 Frame = +3

Query: 258 QRWDVVVXLFFYRDPEESE-KDEQQAKEQ 341
           Q+WDV+V LFFYR+PEE++ +DE +A  Q
Sbjct: 197 QKWDVMVDLFFYREPEETKPEDEDEAGPQ 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  116 bits (278), Expect = 2e-26
 Identities = 51/82 (62%), Positives = 62/82 (75%)
 Frame = +1

Query: 4   FTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 183
           FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K 
Sbjct: 113 FTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKG 172

Query: 184 SHSIGLMWWLLAREVLRLRGVL 249
            HSIG ++WLLAR VL++RG +
Sbjct: 173 KHSIGCLFWLLARMVLQMRGTI 194



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +3

Query: 258 QRWDVVVXLFFYRDPEESEKDEQQAKE 338
           Q+WDV+V LFFYR+PEE++++  +  E
Sbjct: 198 QKWDVMVDLFFYREPEEAKQEGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  116 bits (278), Expect = 2e-26
 Identities = 51/82 (62%), Positives = 62/82 (75%)
 Frame = +1

Query: 4   FTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 183
           FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K 
Sbjct: 113 FTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKG 172

Query: 184 SHSIGLMWWLLAREVLRLRGVL 249
            HSIG ++WLLAR VL++RG +
Sbjct: 173 KHSIGCLFWLLARMVLQMRGTI 194


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 37  PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 186
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 316 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 429
           +++++PR+R W QLN K L LS     K   + L+GLK
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
           protein, Arabidopsis thaliana, EMBL:AJ001729; contains
           Pfam profile PF00225: Kinesin motor domain
          Length = 1273

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 260 LVRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAITGM 105
           L + +T RS STSR ++    P+ + D  +HG  ++      + L   ++ M
Sbjct: 825 LEKPNTGRSKSTSRGSSPGRSPVRYLDTQIHGFKVNIKAERRNKLASVVSRM 876


>At5g09560.1 68418.m01107 KH domain-containing protein various
           predicted RNA binding proteins, Arabidopsis thaliana
          Length = 563

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +1

Query: 34  EPRLLIVLDPAQDHQPITEASYVNIPVI---ALCNTDSPLRFVDIAIPCNTKSS 186
           +PR+  +  P+ DH+ IT AS  N PV     L  +   +R VD+ I C+ +S+
Sbjct: 271 QPRIDYLPHPSYDHRLITSAS-KNPPVTIKQPLQASKDDIRQVDLKILCSNESA 323


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 192 RVGRLGVAWDSNVHKS 145
           R GR+G  WD+NVH++
Sbjct: 107 RSGRIGRCWDANVHRA 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,449,608
Number of Sequences: 28952
Number of extensions: 261051
Number of successful extensions: 702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)