Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30827
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    27   0.94 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   1.2  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.6  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   5.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.7  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   6.7  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   8.8  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    24   8.8  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 339 HVVDVYGLQ*PLNIRWAVSSSNYL 410
           H +DV+  + P NI+W+ S + Y+
Sbjct: 72  HSIDVHNERDPANIKWSASGAEYV 95


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 339 GRATHLEIQVLKSQYSYN 286
           G+A HLE+Q+L  QY  N
Sbjct: 304 GQARHLEVQILADQYGNN 321



 Score = 24.2 bits (50), Expect = 8.8
 Identities = 16/78 (20%), Positives = 30/78 (38%)
 Frame = -1

Query: 239 NKQGGGTYPRGLTSGPTTSNYANYNFAGLIFITRCYSFTVEVNREHLLSTYFIRKIGTRL 60
           ++   G+Y   L     T+   +    GL+ +   +S+TV    E   +   I  +   L
Sbjct: 645 SRSSPGSYHLFLNGSRCTAGVRSLTDGGLLVLLNGHSYTVYYRDEVTGTRISIDNLSCML 704

Query: 59  RDSNTGASLQHECTGRLI 6
              N    L+    G+L+
Sbjct: 705 EQENDPTQLRTPSPGKLV 722


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 395 AHSPPDVKWLLEPIDIYNVDAPPTLR 318
           A  PP +K    P+DI N+DA   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 181 ITQIIILRV*FLLHDVIPSPWKSIVNI 101
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 147 KNQTRKIIICVITGGRT 197
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 401 GRAHSPPDVKWLLEPIDIYN 342
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 42   TGVRIPQAGTNFSNEICTQQMF 107
            T   IP+A  +F+N+I TQ  F
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTF 1323


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 148 LLHDVIPSPWKSIVNIC*VHISLEKLVPACGIRTP 44
           +L+ V   P K+ +N+    ISLE   P CG+  P
Sbjct: 266 ILYMVSKEPGKACMNM--YDISLESTYPTCGMDWP 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,503
Number of Sequences: 5004
Number of extensions: 39925
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)