Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30827
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250... 34 0.044
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490... 29 1.2
03_06_0583 + 34901636-34901721,34901805-34901902,34902029-349021... 28 2.9
12_01_0707 - 6133561-6133947 27 5.0
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20... 27 5.0
04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608... 27 6.6
01_06_0920 - 33009183-33009335,33009421-33009741,33010221-330103... 27 6.6
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207... 27 6.6
03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891 27 8.7
>08_01_0304 -
2502760-2502774,2502844-2502921,2503035-2503103,
2503200-2503289,2503400-2503517,2505548-2505678,
2505756-2506025,2507175-2507308,2507635-2508088
Length = 452
Score = 34.3 bits (75), Expect = 0.044
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 9 KTSGAFVLKRCTGVRIPQAGTNFSNEICTQQMFTIDFHGE 128
K G ++ RCTGV I G N +I T DFHGE
Sbjct: 150 KKDGGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189
>07_01_0654 -
4900509-4900518,4900626-4900709,4900844-4901377,
4901462-4901619,4901703-4901832,4901918-4901999,
4902097-4902230,4902314-4902410,4902512-4902788,
4902881-4903024
Length = 549
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 63 AGTNFSNEICTQQMFTIDFHGEGITSC-NKNQTRKIIICVITGGRTTCESARIGTTALLI 239
+GT+ + ++ +D G GIT+C +N+ +K ++ G + R+ +
Sbjct: 29 SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88
Query: 240 SAVKQN-AFRFEGW 278
+AV A F W
Sbjct: 89 NAVPSTYAIFFTPW 102
>03_06_0583 +
34901636-34901721,34901805-34901902,34902029-34902167,
34902262-34902290,34902406-34902502,34902593-34902648,
34902759-34902866,34902988-34903044,34905585-34905679,
34905822-34905998,34906086-34906189,34906595-34906664,
34906774-34906833
Length = 391
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 66 PPAGFEHRCIASTRMHRTSYP 4
PP G +H CI + R H TS P
Sbjct: 304 PPTGDQHACIQALRDHWTSIP 324
>12_01_0707 - 6133561-6133947
Length = 128
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 314 CISRWVARPRCRCLWAPVT 370
C + WVARP + W P T
Sbjct: 72 CAASWVARPAVQASWRPAT 90
>01_01_0026 +
201042-201110,201252-201359,202511-202639,203164-203440,
203543-203647,203730-203875,204042-204149,204290-204378,
204552-205098
Length = 525
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 100 C*VHISLE--KLVPACGIRTPVHRFNTNAPDVLSF 2
C V SL+ + PACG + P H + + P +L+F
Sbjct: 335 CLVKDSLQFGSIAPACGAKDPHHLDSLSEPQILTF 369
>04_03_0459 +
16159015-16159771,16160251-16160365,16160478-16160844,
16160930-16161244,16161324-16161644,16161730-16161882
Length = 675
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 311 TCISRWVARPRCRC 352
T + W ARPRCRC
Sbjct: 581 TALPPWEARPRCRC 594
>01_06_0920 -
33009183-33009335,33009421-33009741,33010221-33010343,
33010476-33010634,33010720-33011086,33011162-33011315,
33011782-33012874
Length = 789
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 311 TCISRWVARPRCRC 352
T + W ARPRCRC
Sbjct: 695 TALPPWEARPRCRC 708
>01_01_0254 -
2074095-2074100,2074389-2074462,2074572-2074633,
2074790-2075123,2075271-2075487,2075575-2075685,
2076304-2076840
Length = 446
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 259 RFGLKGGVAVVTILRL*NLYLKVGGASTL*MSMGSSNHLTSG 384
+ G+ G + V+ R + L +GG ++MG + HL +G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395
>03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891
Length = 155
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 345 QRGRATHLEIQVLKSQYSYNGYPTLQTETHSASRQK*AGRW 223
QR R L Q K + GY E H+A+ Q GRW
Sbjct: 7 QRERVRRLGSQRSKRWWRGCGYGRCSGEIHTAAHQAHCGRW 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,492,071
Number of Sequences: 37544
Number of extensions: 297365
Number of successful extensions: 658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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