Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30827
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 30   0.95 
SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)           27   5.0  
SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)                 27   6.7  
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               27   8.8  

>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +3

Query: 27  VLKRCTGVRIPQAGTNFSNEICTQQMFTID---FHGEGITSCNKNQTRKIIICVITGGRT 197
           VL+ C   RI  +  N  N  C   +F+     ++G  +  C+   +     CV  GG+ 
Sbjct: 699 VLQDCVNSRIAMSRINTENPQCRALVFSASTELYNGTKVCECDPEGSTNPTQCVAYGGQC 758

Query: 198 TCESARIG 221
            C+    G
Sbjct: 759 PCKPGVAG 766


>SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)
          Length = 291

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -3

Query: 366 TGAHRHLQRGRATHLEIQVLKSQYSYNGYPTLQ-TETHSASRQK*AGRWYLSA 211
           T  H   Q G   H   Q   +QYS   Y T Q   T SAS  K    W L++
Sbjct: 237 TARHSKTQHGTTQHSTTQHSTTQYSTTQYNTTQHVTTRSASTVK-HNNWLLNS 288


>SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)
          Length = 607

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -1

Query: 407 IVGRAHSPPDVKWLLEPIDIYNVDAPPTLRYKF*SLSIVTTATPPF 270
           IVG  H P    WL+  I    V  PP   + F   S+  T T PF
Sbjct: 350 IVGMEHLPAAFGWLIMIISFPGVLGPPLAGWLF---SVSQTYTTPF 392


>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 405 SWTSSQPT*C*VVTGAHRHLQRGRATHLEIQVLKSQYSYNGYPTLQTETH 256
           +WT    T   +VT  H+HL  G  TH  + ++   +    + T+ T TH
Sbjct: 416 AWTHKHLT---IVTWTHKHLTSGTWTHKHLTIVTRTHK---HLTIVTRTH 459


>SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 302 LSIVTTATPPFKPKRILLHGRNKQGGGTYPRGLTSGPTTSNYANYN 165
           L++  T   PF P++      ++   GT      S PTTSNY   N
Sbjct: 251 LALGPTPLVPFLPQKKRFASYHQVASGTENGLPPSAPTTSNYGTMN 296


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 135 TSCNKNQTRKIIICVITGGRTTCESAR 215
           T+C+K + R   IC + GGR  C   R
Sbjct: 102 TACSKVRCRGNSICKVAGGRARCVPLR 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,109,752
Number of Sequences: 59808
Number of extensions: 326668
Number of successful extensions: 561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)