Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30827
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   4.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   7.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 404 VGRAHSPPDVKWLLEPIDIYNVDAPPTLRYK 312
           +G    PPD  W  + +   N D    +RYK
Sbjct: 98  IGVLRLPPDKVWKPDIVLFNNADGNYEVRYK 128


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 299 SIVTTATPPFKPKRILLHGRNKQ 231
           S+V + T PF+P   +L   N+Q
Sbjct: 277 SLVASRTWPFRPSGTVLKDINRQ 299


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 297 TETLELVSQGGWRVHVVDVY 356
           T TL L++    ++H VD Y
Sbjct: 136 TITLTLLAYQATKIHAVDTY 155


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 203 TSGPTTSNYANYNFAGLIFIT 141
           TSG T  NY+   F   +FI+
Sbjct: 564 TSGATIVNYSIMIFLSAVFIS 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,497
Number of Sequences: 438
Number of extensions: 3136
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)