Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30826
(660 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9H9S3 Cluster: Protein transport protein Sec61 subunit... 166 4e-40
UniRef50_Q5KC69 Cluster: Protein transporter, putative; n=4; Euk... 141 1e-32
UniRef50_Q8SQQ4 Cluster: ER PROTEIN-TRANSLOCATION COMPLEX; n=2; ... 124 3e-27
UniRef50_UPI0000499503 Cluster: Sec61 alpha subunit; n=3; Entamo... 121 1e-26
UniRef50_A0CU87 Cluster: Chromosome undetermined scaffold_28, wh... 114 2e-24
UniRef50_Q0J0G0 Cluster: Os09g0512000 protein; n=2; Oryza sativa... 108 1e-22
UniRef50_Q7QS32 Cluster: GLP_661_10951_12423; n=1; Giardia lambl... 106 4e-22
UniRef50_A2DZB2 Cluster: Preprotein translocase, SecY subunit, p... 103 4e-21
UniRef50_A3BXT8 Cluster: Putative uncharacterized protein; n=1; ... 97 3e-19
UniRef50_Q22MG2 Cluster: Preprotein translocase, SecY subunit co... 97 4e-19
UniRef50_Q6C854 Cluster: Similar to sp|P78979 Yarrowia lipolytic... 64 2e-09
UniRef50_A0RUE4 Cluster: Preprotein translocase secY subunit; n=... 64 3e-09
UniRef50_A3C0K6 Cluster: Putative uncharacterized protein; n=1; ... 64 4e-09
UniRef50_A0BY98 Cluster: Chromosome undetermined scaffold_136, w... 59 8e-08
UniRef50_Q2QM98 Cluster: Preprotein translocase, SecY subunit co... 59 1e-07
UniRef50_A7QN16 Cluster: Chromosome undetermined scaffold_129, w... 54 4e-06
UniRef50_A6UWW1 Cluster: Preprotein translocase, SecY subunit; n... 51 2e-05
UniRef50_Q9YDD0 Cluster: Preprotein translocase subunit secY; n=... 51 2e-05
UniRef50_O42965 Cluster: Uncharacterized protein C19G7.17; n=1; ... 49 1e-04
UniRef50_Q2QAQ7 Cluster: Preprotein translocase subunit SecY; n=... 48 2e-04
UniRef50_P28541 Cluster: Preprotein translocase subunit secY; n=... 48 2e-04
UniRef50_Q6L1A4 Cluster: Preprotein translocase secY subunit; n=... 48 3e-04
UniRef50_A3H5A9 Cluster: Preprotein translocase secY subunit; n=... 47 3e-04
UniRef50_A3GFV9 Cluster: Protein involved in co-translational pa... 46 0.001
UniRef50_A0B9U7 Cluster: Preprotein translocase, SecY subunit; n... 45 0.001
UniRef50_A3DND0 Cluster: Preprotein translocase, SecY subunit; n... 45 0.002
UniRef50_O28377 Cluster: Preprotein translocase subunit secY; n=... 44 0.004
UniRef50_A1RWR3 Cluster: Preprotein translocase, SecY subunit; n... 43 0.006
UniRef50_P38353 Cluster: Sec sixty-one protein homolog; n=7; Sac... 43 0.006
UniRef50_Q8U019 Cluster: Preprotein translocase subunit secY; n=... 42 0.017
UniRef50_Q2FSG8 Cluster: Preprotein translocase secY subunit; n=... 40 0.053
UniRef50_A7SFI1 Cluster: Predicted protein; n=1; Nematostella ve... 36 0.65
UniRef50_A2BME2 Cluster: Preprotein translocase subunit secY; n=... 36 0.65
UniRef50_Q9UX84 Cluster: Preprotein translocase subunit secY; n=... 36 0.65
UniRef50_A5K1C6 Cluster: Putative uncharacterized protein; n=1; ... 34 3.5
UniRef50_A2ZMZ3 Cluster: Putative uncharacterized protein; n=2; ... 33 6.1
UniRef50_Q8ZT51 Cluster: Preprotein translocase secY subunit; n=... 33 8.0
>UniRef50_Q9H9S3 Cluster: Protein transport protein Sec61 subunit
alpha isoform 2; n=176; Eukaryota|Rep: Protein transport
protein Sec61 subunit alpha isoform 2 - Homo sapiens
(Human)
Length = 476
Score = 166 bits (404), Expect = 4e-40
Identities = 78/84 (92%), Positives = 81/84 (96%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
SGISLFIATNICETIVWKAFSP T+NTGRGTEFEGAVIALFHLLATR DKVRALREAFYR
Sbjct: 177 SGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYR 236
Query: 183 QNLPNLMNLLATVLVFAIVIYFQG 254
QNLPNLMNL+ATV VFA+VIYFQG
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQG 260
Score = 138 bits (334), Expect = 1e-31
Identities = 67/86 (77%), Positives = 70/86 (81%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
G RVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML+V+FSGNFLVN
Sbjct: 260 GFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVN 319
Query: 431 VLGVWADXXXXXXXXXXXXXXLCYYL 508
+LG WAD LCYYL
Sbjct: 320 LLGQWADVSGGGPARSYPVGGLCYYL 345
Score = 90.6 bits (215), Expect = 3e-17
Identities = 39/51 (76%), Positives = 46/51 (90%)
Frame = +1
Query: 508 APPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
+PPES+ I DPVH ++Y++FMLGSCAFFSKTWI+VSGSSAKDVAKQLKE
Sbjct: 346 SPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKE 396
>UniRef50_Q5KC69 Cluster: Protein transporter, putative; n=4;
Eukaryota|Rep: Protein transporter, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 478
Score = 141 bits (342), Expect = 1e-32
Identities = 68/84 (80%), Positives = 72/84 (85%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
SGISLFIATNICE+IVWKAFSP TVNTGRG EFEGA+IAL HLL T DK RAL+EAFYR
Sbjct: 178 SGISLFIATNICESIVWKAFSPNTVNTGRGPEFEGAIIALIHLLFTWNDKTRALKEAFYR 237
Query: 183 QNLPNLMNLLATVLVFAIVIYFQG 254
LPN+MNLLATV VFA VIY QG
Sbjct: 238 DRLPNIMNLLATVAVFAAVIYLQG 261
Score = 96.3 bits (229), Expect = 6e-19
Identities = 41/67 (61%), Positives = 56/67 (83%)
Frame = +2
Query: 245 LPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFL 424
L G R+++PIKS++ RGQ +YP+KLFYTSN+PI+LQSAL SN++++SQMLA +F N L
Sbjct: 259 LQGFRIEIPIKSSKMRGQRGTYPVKLFYTSNMPIMLQSALTSNVFLVSQMLAGRFPDNLL 318
Query: 425 VNVLGVW 445
V +LGVW
Sbjct: 319 VRLLGVW 325
Score = 66.1 bits (154), Expect = 7e-10
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
P SL DP H ++Y+ F++ +CA FSKTWI+VSGS +DVAKQLK+
Sbjct: 348 PHSLTSALKDPFHTVIYIAFIVTACALFSKTWIEVSGSGPRDVAKQLKD 396
>UniRef50_Q8SQQ4 Cluster: ER PROTEIN-TRANSLOCATION COMPLEX; n=2;
Apansporoblastina|Rep: ER PROTEIN-TRANSLOCATION COMPLEX
- Encephalitozoon cuniculi
Length = 410
Score = 124 bits (298), Expect = 3e-27
Identities = 54/84 (64%), Positives = 69/84 (82%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
+G++LFIA N+CE+I+WKAFSP + TGRG EFEG+VIALFHLL R +K A+ EAF+R
Sbjct: 114 NGVNLFIAANVCESIIWKAFSPKVLFTGRGIEFEGSVIALFHLLVVRKNKFAAIYEAFFR 173
Query: 183 QNLPNLMNLLATVLVFAIVIYFQG 254
QNLPNL +LL+T+L+F VIY QG
Sbjct: 174 QNLPNLFSLLSTILLFVFVIYLQG 197
Score = 65.7 bits (153), Expect = 9e-10
Identities = 30/67 (44%), Positives = 44/67 (65%)
Frame = +2
Query: 245 LPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFL 424
L G+RV+LP +S++ RG +PIKL YTS +PII QS +V ++ IS L ++ +
Sbjct: 195 LQGMRVELPTESSQVRGHVGKFPIKLLYTSTMPIIAQSYIVGHISSISSFLYKRWPQYLV 254
Query: 425 VNVLGVW 445
V +LGVW
Sbjct: 255 VRILGVW 261
Score = 35.1 bits (77), Expect = 1.5
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
PES+ DP+ ++Y+ M + A S +W++++ S + A++LKE
Sbjct: 282 PESIFEGFRDPLRFVIYLAIMFLTSAILSTSWLELNELSPEKAAQKLKE 330
>UniRef50_UPI0000499503 Cluster: Sec61 alpha subunit; n=3; Entamoeba
histolytica HM-1:IMSS|Rep: Sec61 alpha subunit -
Entamoeba histolytica HM-1:IMSS
Length = 447
Score = 121 bits (292), Expect = 1e-26
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 1/129 (0%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
S ISLFIATNICE+IVW AFSP T + G G++FEG++I FHLL TRPDK+ AL +AF+R
Sbjct: 150 SAISLFIATNICESIVWSAFSPLTTSVGTGSQFEGSIINFFHLLITRPDKLGALYDAFFR 209
Query: 183 QNLPNLMNLLATVLVFAIVIYFQG-SV*ICPSSLLVIVDSILHTQSNYSTLLIYPSFCSL 359
NL NL+ATV+VF V+YFQG V I SS V+S NYS L Y S +
Sbjct: 210 TEAGNLSNLIATVVVFLTVMYFQGFKVDIPLSSKQGRVES-----QNYSIRLFYTSNMPI 264
Query: 360 LLSPIFMSS 386
+L S+
Sbjct: 265 ILHSALTSN 273
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/86 (45%), Positives = 55/86 (63%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
G +VD+P+ S + R + +Y I+LFYTSN+PIIL SAL SN+++ISQ+L +F NFL+N
Sbjct: 233 GFKVDIPLSSKQGRVESQNYSIRLFYTSNMPIILHSALTSNIFIISQLLFKRFPTNFLIN 292
Query: 431 VLGVWADXXXXXXXXXXXXXXLCYYL 508
+ G W+ LCYYL
Sbjct: 293 LFGSWS--AISSRGQMYPVGGLCYYL 316
Score = 48.4 bits (110), Expect = 2e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
P SL + +P+H ++ + + C FS+ WI VSGSS+ DV KQL +
Sbjct: 319 PNSLFELVQNPIHGVISIGLTVFMCTIFSREWIKVSGSSSADVKKQLAD 367
>UniRef50_A0CU87 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=11; Eukaryota|Rep: Chromosome
undetermined scaffold_28, whole genome shotgun sequence
- Paramecium tetraurelia
Length = 474
Score = 114 bits (274), Expect = 2e-24
Identities = 56/84 (66%), Positives = 63/84 (75%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
SG SLFIA NICE I+WKAFSP T T G E+EGA+IAL H L + DK+ AL+ A R
Sbjct: 181 SGTSLFIAINICENIMWKAFSPITHKTELGLEYEGAIIALLHGLFVQSDKISALQSAILR 240
Query: 183 QNLPNLMNLLATVLVFAIVIYFQG 254
+LPNL NLLATVLVF IVIYFQG
Sbjct: 241 DSLPNLTNLLATVLVFLIVIYFQG 264
Score = 92.7 bits (220), Expect = 7e-18
Identities = 42/67 (62%), Positives = 54/67 (80%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
G +VD+PIK+ + RG +SYPIKLFYTSNIPIILQ+ALVSNLY +SQ+L F GNFL+
Sbjct: 264 GFKVDIPIKNNKVRGGLTSYPIKLFYTSNIPIILQTALVSNLYFLSQILYRNFKGNFLIR 323
Query: 431 VLGVWAD 451
+LG + +
Sbjct: 324 LLGYYQE 330
Score = 80.6 bits (190), Expect = 3e-14
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = +1
Query: 508 APPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
+PP S++ DP+H +LY F+LG+CA FSKTWIDVSGSS KDVAKQLKE
Sbjct: 347 SPPRSISEAIFDPIHTILYTAFILGTCAVFSKTWIDVSGSSPKDVAKQLKE 397
>UniRef50_Q0J0G0 Cluster: Os09g0512000 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os09g0512000 protein -
Oryza sativa subsp. japonica (Rice)
Length = 466
Score = 108 bits (259), Expect = 1e-22
Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVN-TGRGTEFEGAVIALFHLLATRPDKVRALREAFY 179
SGISLF ATNIC I+WKAFSP +V + EFEGAVIA HLL TR DK+ A+ +AFY
Sbjct: 173 SGISLFTATNICVNILWKAFSPMSVMYPEQSPEFEGAVIAWVHLLMTRTDKLSAMSKAFY 232
Query: 180 RQNLPNLMNLLATVLVFAIVIYFQGSV*ICP 272
RQNLPN++N LAT L + I+FQG + P
Sbjct: 233 RQNLPNIINFLATCLFVPLAIFFQGFYIVLP 263
Score = 43.2 bits (97), Expect = 0.006
Identities = 25/65 (38%), Positives = 37/65 (56%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
G + LP+++ R Y IKL + P++L L+ YV S++L K+SGN LVN
Sbjct: 257 GFYIVLPVRTRRNFQAYCH--IKLSHFLYGPVVLHRLLLPLPYVASKVLYKKYSGNTLVN 314
Query: 431 VLGVW 445
+LG W
Sbjct: 315 LLGKW 319
Score = 35.1 bits (77), Expect = 1.5
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFS 600
P LA + DP HA +YV F+L SC F S
Sbjct: 341 PPILADLHRDPFHAFIYVAFVLISCVFIS 369
>UniRef50_Q7QS32 Cluster: GLP_661_10951_12423; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_661_10951_12423 - Giardia lamblia
ATCC 50803
Length = 490
Score = 106 bits (255), Expect = 4e-22
Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 5/138 (3%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
SGISLF N+CE I+WK+FS ++ G G EFEGAV+A H + T+P+K++A++ AF+R
Sbjct: 196 SGISLFTTANVCENIIWKSFSFFRIDRGNGKEFEGAVLAAVHYMFTQPNKLKAIKLAFFR 255
Query: 183 QNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTLLIYPS----- 347
L N+MN++AT++VF + IY QG I + + + Q Y L+Y S
Sbjct: 256 DGLTNVMNIIATLVVFLVAIYLQG---IKRNLRIQHAKAGPSVQQQYPIRLLYASSTPMM 312
Query: 348 FCSLLLSPIFMSSHRCWQ 401
S L S +FM S W+
Sbjct: 313 IISTLTSNVFMISQAIWR 330
Score = 50.0 bits (114), Expect = 5e-05
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +2
Query: 245 LPGLRVDLPIKSARYRGQYSS-YPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNF 421
L G++ +L I+ A+ YPI+L Y S+ P+++ S L SN+++ISQ + +F +
Sbjct: 277 LQGIKRNLRIQHAKAGPSVQQQYPIRLLYASSTPMMIISTLTSNVFMISQAIWRRFGNSI 336
Query: 422 LVNVLGVWAD 451
+LG WA+
Sbjct: 337 FTALLGTWAE 346
Score = 40.7 bits (91), Expect = 0.030
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 508 APPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLK 657
A P SL P+H +L+ + ++ S+ W++ SG AK+VA+ L+
Sbjct: 365 ASPYSLRSALFHPIHTILHAVTLVALSGLISRVWVEFSGEGAKEVAEMLE 414
>UniRef50_A2DZB2 Cluster: Preprotein translocase, SecY subunit,
putative; n=5; Trichomonas vaginalis G3|Rep: Preprotein
translocase, SecY subunit, putative - Trichomonas
vaginalis G3
Length = 484
Score = 103 bits (247), Expect = 4e-21
Identities = 49/82 (59%), Positives = 59/82 (71%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
SGISLFI TNICE I+W+ FS + GRGTE+EG VIA FH L TR +K+RALR+ +R
Sbjct: 178 SGISLFICTNICEMIMWRLFSFNHYSMGRGTEYEGLVIAFFHYLFTRKNKLRALRDIVFR 237
Query: 183 QNLPNLMNLLATVLVFAIVIYF 248
LPNL L +TV+VF IYF
Sbjct: 238 PQLPNLCQLFSTVIVFGACIYF 259
Score = 46.0 bits (104), Expect = 8e-04
Identities = 22/85 (25%), Positives = 41/85 (48%)
Frame = +2
Query: 254 LRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVNV 433
+++++ +++ R + + IKLFY SN P+I+QS ++S L S+ + + + +
Sbjct: 262 IKINVGLETTVNRARPEPFEIKLFYCSNTPLIIQSTILSQLAGFSRTIYFHWPESLATQI 321
Query: 434 LGVWADXXXXXXXXXXXXXXLCYYL 508
GVW L YYL
Sbjct: 322 FGVWRSHNGMSYDYSTPVSGLIYYL 346
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
P+S+ HDP+H ++Y++F L S F S ++ S + DVA+ LK+
Sbjct: 349 PQSIQQTIHDPLHTIIYLIFSLSSAGFISYYYLRFSNQAPADVAEALKK 397
>UniRef50_A3BXT8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 377
Score = 97.1 bits (231), Expect = 3e-19
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
G RV LP++S RGQ SYPIKLFYTSN+PIIL SAL++NLY ISQ+L ++SGNFLVN
Sbjct: 165 GFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLYFISQLLYRRYSGNFLVN 224
Query: 431 VLGVWAD 451
+LG W +
Sbjct: 225 LLGKWKE 231
Score = 79.8 bits (188), Expect = 5e-14
Identities = 36/49 (73%), Positives = 41/49 (83%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
P SLA + +P HAL YV+FML +CA FSKTWI+VSGSSAKDVAKQLKE
Sbjct: 251 PSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKE 299
Score = 48.8 bits (111), Expect = 1e-04
Identities = 32/82 (39%), Positives = 42/82 (51%)
Frame = +3
Query: 120 LFHLLATRPDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDS 299
L +L + V + Y NLPN++NLLATVLVF IVIYFQG + P V +
Sbjct: 121 LLGILIAIGEAVAYVLSGMYGSNLPNVVNLLATVLVFLIVIYFQGFRVVLP----VRSKN 176
Query: 300 ILHTQSNYSTLLIYPSFCSLLL 365
Q +Y L Y S ++L
Sbjct: 177 ARGQQGSYPIKLFYTSNMPIIL 198
>UniRef50_Q22MG2 Cluster: Preprotein translocase, SecY subunit
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Preprotein translocase, SecY subunit
containing protein - Tetrahymena thermophila SB210
Length = 551
Score = 96.7 bits (230), Expect = 4e-19
Identities = 45/86 (52%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPAT--VNTGRGTEFEGAVIALFHLLATRPDKVRALREAF 176
S IS+FIA NICETI+WK+FSP T + ++EGA++ LFH L +K AL+ AF
Sbjct: 255 SAISVFIAINICETIIWKSFSPITYPIPGFEKEQYEGAILNLFHSLFAIDNKFVALQNAF 314
Query: 177 YRQNLPNLMNLLATVLVFAIVIYFQG 254
YR +LPNL +L++T L+F +V+YFQG
Sbjct: 315 YRSHLPNLASLISTALIFIVVVYFQG 340
Score = 91.9 bits (218), Expect = 1e-17
Identities = 41/66 (62%), Positives = 52/66 (78%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
G +VD+ +K+ R RG SYPIKLFYTSN+PIILQSAL+SNLY SQ+L F+GNF+V
Sbjct: 340 GFKVDIALKNDRVRGAIQSYPIKLFYTSNMPIILQSALISNLYFFSQILYRNFNGNFIVG 399
Query: 431 VLGVWA 448
+LG W+
Sbjct: 400 LLGKWS 405
Score = 76.6 bits (180), Expect = 5e-13
Identities = 32/51 (62%), Positives = 40/51 (78%)
Frame = +1
Query: 508 APPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
+PP + + DP+H +LYV+F+L +CA FSKTWI VSGSS KDVAKQLKE
Sbjct: 425 SPPHGMIEVISDPLHTILYVVFILTTCALFSKTWIQVSGSSVKDVAKQLKE 475
>UniRef50_Q6C854 Cluster: Similar to sp|P78979 Yarrowia lipolytica
transport protein SEC61 alpha subunit; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P78979 Yarrowia lipolytica
transport protein SEC61 alpha subunit - Yarrowia
lipolytica (Candida lipolytica)
Length = 485
Score = 64.5 bits (150), Expect = 2e-09
Identities = 29/63 (46%), Positives = 42/63 (66%)
Frame = +2
Query: 257 RVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVNVL 436
RVD+PIKS+R R +++P+KL YT ++ + L SA N+ + SQ L V+F N +V VL
Sbjct: 281 RVDIPIKSSRVRSLATAFPVKLLYTGSMCLFLLSAFSQNVLIYSQSLYVQFPDNLMVQVL 340
Query: 437 GVW 445
G W
Sbjct: 341 GSW 343
Score = 44.8 bits (101), Expect = 0.002
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +1
Query: 529 HIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLK 657
+ +D + +LY ++ + C FSK W ++SGS+ KDVAKQ +
Sbjct: 361 NFGYDVIKMVLYSVYTIVGCTLFSKYWAEISGSAPKDVAKQFQ 403
Score = 39.9 bits (89), Expect = 0.053
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALF-----HLLATRPDKVR-AL 164
SG LF A ++ + +W+ + V+ EF G++ AL + L R +
Sbjct: 194 SGSGLFTALSVSQNFMWQNLALLKVHQ----EFVGSIPALLMGLWKNGLFNFGGSYRYVI 249
Query: 165 REAFYRQNLPNLMNLLATVLVFAIVIY 245
+F+RQNLPNL+ L +V VF + IY
Sbjct: 250 ENSFFRQNLPNLLQLYMSVAVFMLTIY 276
>UniRef50_A0RUE4 Cluster: Preprotein translocase secY subunit; n=2;
Thermoprotei|Rep: Preprotein translocase secY subunit -
Cenarchaeum symbiosum
Length = 478
Score = 64.1 bits (149), Expect = 3e-09
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKF---SGNF 421
G+++++PI S +YRG ++YPIKL Y SNIP+IL SAL +N I QM F + N
Sbjct: 258 GMKIEIPIVSTKYRGFSATYPIKLMYVSNIPVILASALTANAIFIGQMFWSNFNPRNDNI 317
Query: 422 LVNVL 436
+NVL
Sbjct: 318 FLNVL 322
Score = 48.4 bits (110), Expect = 2e-04
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +1
Query: 511 PPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQL 654
PP L A DP+ A+ YVLFM+G F K W+++ G S K AK L
Sbjct: 343 PPRGLDIAALDPMRAVGYVLFMIGIVVVFGKLWVELGGLSPKSAAKNL 390
Score = 41.5 bits (93), Expect = 0.017
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPD-KVRALREAFY 179
SGISLFI + + I+W FSP +G + +F + + + F+
Sbjct: 180 SGISLFIMAGVAQQILWSLFSPLPAG-------DGFAVGIFPFIGQWASVGMGNFEDIFF 232
Query: 180 RQN-LPNLMNLLATVLVFAIVIYFQG 254
R N LP++ LL T V I++Y QG
Sbjct: 233 RYNQLPSIFGLLLTGGVLLILVYTQG 258
>UniRef50_A3C0K6 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 215
Score = 63.7 bits (148), Expect = 4e-09
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +2
Query: 218 CSCLCYSDILPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 397
C L + L G RV LP++S RG+ + PIKL YTS +P++L SA VS+LY +SQ+L
Sbjct: 7 CVVLLATVFLEGFRVMLPLRSRDARGRQLALPIKLLYTSTMPVVLHSAAVSSLYTVSQLL 66
Query: 398 AV-KFSGNFL 424
+F+G+ L
Sbjct: 67 HYSRFAGSLL 76
>UniRef50_A0BY98 Cluster: Chromosome undetermined scaffold_136,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_136,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 366
Score = 59.3 bits (137), Expect = 8e-08
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = +1
Query: 541 DPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
DP++ +LY F+ G CA SKTWIDVSGSS +VAKQLKE
Sbjct: 263 DPINKVLYTAFIHGICAVLSKTWIDVSGSSPNEVAKQLKE 302
>UniRef50_Q2QM98 Cluster: Preprotein translocase, SecY subunit
containing protein; n=3; Oryza sativa|Rep: Preprotein
translocase, SecY subunit containing protein - Oryza
sativa subsp. japonica (Rice)
Length = 461
Score = 58.8 bits (136), Expect = 1e-07
Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVN-TGRGTEFEGAVIALFHLLATRP----DKVRALR 167
S SL IATN CE V FSP + G G EFEG V A+ H +A P K AL
Sbjct: 189 SAASLLIATNACERAVSHLFSPVKLRLAGAGPEFEGPVFAVTHRVAAAPPSWRHKAGALL 248
Query: 168 EAFYRQNLPNLMNLLATVLVFAIVI 242
R +LPNL N + T ++F + +
Sbjct: 249 FTLLRLDLPNLSNYMTTCVMFVLAV 273
>UniRef50_A7QN16 Cluster: Chromosome undetermined scaffold_129,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome undetermined scaffold_129, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 116
Score = 53.6 bits (123), Expect = 4e-06
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +1
Query: 523 LAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLK 657
L +A +P HA Y+LFM +C F KTWI+V S A +V KQLK
Sbjct: 71 LVDMAANPFHAFFYILFMFAACTLFEKTWIEVCRSYATNVVKQLK 115
>UniRef50_A6UWW1 Cluster: Preprotein translocase, SecY subunit; n=2;
Methanococcus|Rep: Preprotein translocase, SecY subunit
- Methanococcus aeolicus Nankai-3
Length = 443
Score = 51.2 bits (117), Expect = 2e-05
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +2
Query: 254 LRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVK 406
+RV++P+ R RG YPIK Y SN+P+IL AL +N+ ++ M+ K
Sbjct: 235 MRVEIPLAHGRVRGAVGKYPIKFIYVSNLPVILAMALFANVQLVGLMVQSK 285
Score = 45.2 bits (102), Expect = 0.001
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 508 APPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQL 654
A P L + DP+ A++Y + M+ C F W++ SG AK +AK++
Sbjct: 308 ATPYGLTSVLADPIRAIIYTILMIIFCIIFGMFWVETSGLDAKSMAKKM 356
>UniRef50_Q9YDD0 Cluster: Preprotein translocase subunit secY; n=1;
Aeropyrum pernix|Rep: Preprotein translocase subunit
secY - Aeropyrum pernix
Length = 457
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/52 (42%), Positives = 36/52 (69%)
Frame = +2
Query: 245 LPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLA 400
L +RV++PI S R++G S P++ Y +NIPI+L LVS+L ++ ++LA
Sbjct: 247 LQAMRVEIPITSERFKGIRSRVPLQFIYVTNIPILLVGILVSDLLLVQRLLA 298
>UniRef50_O42965 Cluster: Uncharacterized protein C19G7.17; n=1;
Schizosaccharomyces pombe|Rep: Uncharacterized protein
C19G7.17 - Schizosaccharomyces pombe (Fission yeast)
Length = 475
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/48 (43%), Positives = 35/48 (72%)
Frame = +2
Query: 254 LRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 397
+R+D+PI+S+R RG ++P+KL YTS IP+I +++S+L V + L
Sbjct: 265 IRIDVPIRSSRVRGVRQNFPLKLLYTSVIPLIYFYSILSHLLVFAYAL 312
Score = 34.3 bits (75), Expect = 2.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 511 PPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
PP L+ PVH ++Y + ++ +FS W++ + +DV KE
Sbjct: 351 PPLGLSEALLHPVHTVIYTITLICITIYFSLLWMNATAGGPRDVLLFFKE 400
>UniRef50_Q2QAQ7 Cluster: Preprotein translocase subunit SecY; n=2;
environmental samples|Rep: Preprotein translocase
subunit SecY - uncultured marine group II euryarchaeote
HF70_59C08
Length = 604
Score = 48.0 bits (109), Expect = 2e-04
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +2
Query: 257 RVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNL 376
+++LP+ + RG YPI+L Y SNIP+IL +AL++NL
Sbjct: 361 KLELPLTHGKVRGHRGQYPIRLVYASNIPVILMAALLANL 400
Score = 37.9 bits (84), Expect = 0.21
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 499 LLPAPPESLAHIAHDPV-HALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLK 657
LL P+ H V H + YV M F+K WI+ + AKDVAKQ++
Sbjct: 462 LLNQSPDPYGHSLWQVVLHVITYVTVMTLGSMMFAKFWIETTNMGAKDVAKQIE 515
>UniRef50_P28541 Cluster: Preprotein translocase subunit secY; n=10;
Euryarchaeota|Rep: Preprotein translocase subunit secY -
Methanococcus vannielii
Length = 438
Score = 48.0 bits (109), Expect = 2e-04
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +2
Query: 254 LRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 397
+RV++P+ R +G YPIK Y SN+P+IL +AL +N+ + L
Sbjct: 230 IRVEIPLAHGRVKGAVGKYPIKFIYVSNLPVILAAALFANIQLWGMFL 277
Score = 47.6 bits (108), Expect = 3e-04
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQL 654
P +++I DP+HA+ Y L M+ C F W++ SG AK +AK+L
Sbjct: 304 PYGISNIISDPLHAIFYTLMMVIFCILFGLFWVETSGLDAKSMAKKL 350
>UniRef50_Q6L1A4 Cluster: Preprotein translocase secY subunit; n=5;
Thermoplasmatales|Rep: Preprotein translocase secY
subunit - Picrophilus torridus
Length = 587
Score = 47.6 bits (108), Expect = 3e-04
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +2
Query: 257 RVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNL 376
+++LPI R RG YP++L Y SNIP+IL +AL++N+
Sbjct: 338 KIELPIAHERVRGARGRYPLQLLYASNIPVILATALLANI 377
Score = 43.2 bits (97), Expect = 0.006
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFS--PATVNT--GRGTEFEGAVIALFHLLATRPDKV---RA 161
SGISLFIA ++ E + F+ P+T+ + GA+ +L P
Sbjct: 247 SGISLFIAADVSEQLFIGTFNWLPSTITSPLSLSNPPAGAIPKALYLFWMAPGSYLTNTG 306
Query: 162 LREAFYRQNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTLLIY 341
+ + + Q P ++ LL TVL+F IV YFQ S L + + + + Y L+Y
Sbjct: 307 MEQILFAQPNP-MIALLGTVLIFFIVAYFQSS----KIELPIAHERVRGARGRYPLQLLY 361
Query: 342 PSFCSLLLSPIFMSSHRCW 398
S ++L+ +++ W
Sbjct: 362 ASNIPVILATALLANISMW 380
>UniRef50_A3H5A9 Cluster: Preprotein translocase secY subunit; n=1;
Caldivirga maquilingensis IC-167|Rep: Preprotein
translocase secY subunit - Caldivirga maquilingensis
IC-167
Length = 482
Score = 47.2 bits (107), Expect = 3e-04
Identities = 28/83 (33%), Positives = 41/83 (49%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
SGISLFI +I +I F P TV G A++A + A + L YR
Sbjct: 177 SGISLFILISIIRSIFQSTFMPVTVGAGELLGIIPALVAAVYSAAV-SHTLAPLLSIVYR 235
Query: 183 QNLPNLMNLLATVLVFAIVIYFQ 251
NLP L+ L+AT+++ + Y +
Sbjct: 236 FNLPGLIGLIATIVLGGFIAYVE 258
Score = 35.5 bits (78), Expect = 1.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 254 LRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLY 379
+ V +P+ +Y G SYP K+ Y S +PII + V+ +Y
Sbjct: 260 MEVRIPLSFVQYGGYKMSYPFKVMYVSVLPIIFTAYTVALIY 301
>UniRef50_A3GFV9 Cluster: Protein involved in co-translational
pathway of protein transport; n=6;
Saccharomycetales|Rep: Protein involved in
co-translational pathway of protein transport - Pichia
stipitis (Yeast)
Length = 501
Score = 45.6 bits (103), Expect = 0.001
Identities = 17/44 (38%), Positives = 30/44 (68%)
Frame = +2
Query: 245 LPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNL 376
L LR++LPI+S R RG + +PI+L YT +P++ +++N+
Sbjct: 273 LQNLRIELPIRSTRARGMNNVFPIRLLYTGALPVLFAYTVIANI 316
Score = 34.7 bits (76), Expect = 2.0
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 520 SLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
SL P+ ++Y ++ +F++ W +SGS+ KD++KQ K+
Sbjct: 367 SLLSTILSPIRTVVYSATVIVLATWFAEKWSYISGSAPKDISKQFKD 413
>UniRef50_A0B9U7 Cluster: Preprotein translocase, SecY subunit; n=6;
Euryarchaeota|Rep: Preprotein translocase, SecY subunit
- Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 537
Score = 45.2 bits (102), Expect = 0.001
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = +2
Query: 242 ILPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVK 406
++ R+++P+ +R RG +P+KL Y S +P+IL AL +N+ ++ +L K
Sbjct: 264 LVESTRIEIPLAHSRVRGARGRFPVKLVYASVLPMILVRALQANIEMLGALLTAK 318
>UniRef50_A3DND0 Cluster: Preprotein translocase, SecY subunit; n=1;
Staphylothermus marinus F1|Rep: Preprotein translocase,
SecY subunit - Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1)
Length = 476
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 245 LPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFL 424
L G++V++P+ S R R + P+K Y +NIP++L L S++ V + + + +L
Sbjct: 257 LEGMKVEIPVTSPRLRSIKTKVPLKFLYVTNIPVLLVGILYSDILVFASLTRL-----YL 311
Query: 425 VNVLGVW-ADXXXXXXXXXXXXXXLCYYL 508
N++ W A+ L YYL
Sbjct: 312 QNIVPDWVANMLATYDANGRLTGGLAYYL 340
Score = 42.7 bits (96), Expect = 0.008
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +1
Query: 508 APPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQL 654
+PP SLA +DP+ A++Y + +L F W+++SG SA A++L
Sbjct: 341 SPPGSLARTLYDPMQAVIYAVSVLFLATLFGIMWVEISGLSASAQAEEL 389
Score = 38.3 bits (85), Expect = 0.16
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
SG+SLFI T + + I+W SP T++ E G + +L+T + + R
Sbjct: 184 SGVSLFILTGVAQRILWNLISPITIS----GEAVGFIPYAIQVLSTGGN----INSIIIR 235
Query: 183 QNLPNLMNLLATVLVFAIVIYFQG 254
+L+ L+ T ++ +++Y +G
Sbjct: 236 SGGRDLVGLIVTFVIIFLLVYLEG 259
>UniRef50_O28377 Cluster: Preprotein translocase subunit secY; n=44;
Euryarchaeota|Rep: Preprotein translocase subunit secY -
Archaeoglobus fulgidus
Length = 493
Score = 43.6 bits (98), Expect = 0.004
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 397
G RV++P+ A RG +PIKL Y S +P+I AL +N+ + Q+L
Sbjct: 264 GTRVEIPLAHAVARGARGRFPIKLIYASVLPMIFVRALQANVVALGQVL 312
>UniRef50_A1RWR3 Cluster: Preprotein translocase, SecY subunit; n=1;
Thermofilum pendens Hrk 5|Rep: Preprotein translocase,
SecY subunit - Thermofilum pendens (strain Hrk 5)
Length = 476
Score = 43.2 bits (97), Expect = 0.006
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 508 APPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQL 654
+PP SLA DPVH ++Y L +G F WI SG + A+QL
Sbjct: 341 SPPRSLASALADPVHLVVYSLLYIGFAVLFGVAWILTSGMDPETQAEQL 389
Score = 41.9 bits (94), Expect = 0.013
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 245 LPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 397
+ +++ +P+ S R+ G + P+K Y S +P+IL AL +N+ + +Q L
Sbjct: 253 MESMKITIPVSSVRFGGAKTRIPLKFLYVSVMPVILVGALYANVVMFTQAL 303
>UniRef50_P38353 Cluster: Sec sixty-one protein homolog; n=7;
Saccharomycetales|Rep: Sec sixty-one protein homolog -
Saccharomyces cerevisiae (Baker's yeast)
Length = 490
Score = 43.2 bits (97), Expect = 0.006
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = +2
Query: 227 LCYSDILPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 397
+CY L +RV+LPI+S R RG + YPIKL YT + ++ ++ +++ + +L
Sbjct: 260 VCY---LQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVL 313
Score = 38.3 bits (85), Expect = 0.16
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 502 LPAPPESLAH-IAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
L APP S + P+ + Y F+L + +F+ W +SGSSA+DVA + K+
Sbjct: 349 LLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKD 402
Score = 33.5 bits (73), Expect = 4.6
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRG--TEFEGAVIALFHLLATRPDK-VRALREA 173
SG + I +V F + + G TE +GA+I L L ++ + + A
Sbjct: 179 SGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISA 238
Query: 174 FYRQNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTLLIYPSFC 353
F R LPNL + VL AI++ + SV + L + T + Y L+Y
Sbjct: 239 FNRDYLPNLTTTI-IVLAIAIIVCYLQSVRV---ELPIRSTRARGTNNVYPIKLLYTGCL 294
Query: 354 SLLLS 368
S+L S
Sbjct: 295 SVLFS 299
>UniRef50_Q8U019 Cluster: Preprotein translocase subunit secY; n=4;
Thermococcaceae|Rep: Preprotein translocase subunit secY
- Pyrococcus furiosus
Length = 468
Score = 41.5 bits (93), Expect = 0.017
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPAT-VNTGRGTEFEGAVIALFHLLATRPDKVRALREAFY 179
SGISLFIA + +TI+ ++ +P T N + A++ K L A Y
Sbjct: 175 SGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILK-GDLWGAIY 233
Query: 180 R-QNLPNLMNLLATVLVFAIVIYFQ 251
R + P++++++AT++VF IV+YF+
Sbjct: 234 RGGSAPDMLSVVATIVVFFIVVYFE 258
Score = 40.3 bits (90), Expect = 0.040
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = +1
Query: 496 VLLPAPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLK 657
VL PP ++ + +PV A++Y++ + F W++++G A+ +A+QL+
Sbjct: 329 VLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQ 382
Score = 39.9 bits (89), Expect = 0.053
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = +2
Query: 254 LRVDLPIKSARYRGQY--SSYPIKLFYTSNIPIILQSALVSNLYVISQML 397
+RV++P+ YRG SYPI+ Y SNIPIIL AL +N+ + +++L
Sbjct: 260 MRVEIPLG---YRGVTVRGSYPIRFLYVSNIPIILTFALYANIQLWARVL 306
>UniRef50_Q2FSG8 Cluster: Preprotein translocase secY subunit; n=4;
Methanomicrobiales|Rep: Preprotein translocase secY
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 479
Score = 39.9 bits (89), Expect = 0.053
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +2
Query: 257 RVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 397
RV++P+ + RG + +P+KL Y S +P+IL L +N+ +I L
Sbjct: 257 RVEIPLAHTQVRGARARFPVKLIYASVLPMILVRVLQANVQMIGLFL 303
>UniRef50_A7SFI1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 523
Score = 36.3 bits (80), Expect = 0.65
Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +3
Query: 45 IVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFY--RQNLPNLMNLLAT 218
I+ + + A N R EF ++A+ + AT P + A+ E +Y + + L+ ++
Sbjct: 163 IILQGVTLANSNASRAIEFNRVMVAMNNSNATEPSRDVAVFELWYWVLRAIITLLTIVGN 222
Query: 219 VLVFAIVIY-----FQGSV*ICPSSLLVIVDSILHTQSNYSTLLIYPSFC 353
+V +++ +V IC ++ I+ I+ T S ++ +YP C
Sbjct: 223 AVVILLILCCPRLRITPNVFICTLAIADILVGIVITPSEFACAFVYPGAC 272
>UniRef50_A2BME2 Cluster: Preprotein translocase subunit secY; n=1;
Hyperthermus butylicus DSM 5456|Rep: Preprotein
translocase subunit secY - Hyperthermus butylicus
(strain DSM 5456 / JCM 9403)
Length = 464
Score = 36.3 bits (80), Expect = 0.65
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 254 LRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLA 400
+RV +P+ S RY + P+ Y +NIPI+ + VS++ V ++A
Sbjct: 260 MRVYIPVTSPRYGSIKTRIPLNFIYVTNIPILFVAIAVSDIKVFEIVIA 308
Score = 34.7 bits (76), Expect = 2.0
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
S +SLFI ++ + + W+ V T G +A H+++T V R
Sbjct: 185 SALSLFIVASVVKGLFWQLAGSTKVATPEGQPVYYGWLA--HVVSTGDLGV-------LR 235
Query: 183 QNLPNLMNLLATVLVFAIVIYFQ 251
+ +P+++ LAT+ + ++IYFQ
Sbjct: 236 RGMPDMVGFLATIAIIMVLIYFQ 258
>UniRef50_Q9UX84 Cluster: Preprotein translocase subunit secY; n=4;
Sulfolobaceae|Rep: Preprotein translocase subunit secY -
Sulfolobus solfataricus
Length = 469
Score = 36.3 bits (80), Expect = 0.65
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +2
Query: 245 LPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAV--KFSGN 418
L + +++P+ S + RG + P+ Y S+IP+I + L S++ + + + + + N
Sbjct: 258 LTTMTIEIPVTSQKLRGIRRTIPLNFLYVSSIPVIFVAVLGSDIQLFASLASYVSPSASN 317
Query: 419 FLVNVLGVW 445
L V GV+
Sbjct: 318 ILNTVSGVF 326
Score = 35.5 bits (78), Expect = 1.1
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
SG+SLFI + + + W F A+V++ G ALF LA+ D + +
Sbjct: 178 SGVSLFILAGVMKIMFWDMFGIASVSSQNLP--IGFFPALFTALASHSDVLNLIVNT-ST 234
Query: 183 QNL--PNLMNLLATVLVFAIVIY 245
+NL P+L+ L+ T+ + I IY
Sbjct: 235 KNLFQPDLVGLVTTIALIIITIY 257
Score = 33.1 bits (72), Expect = 6.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 508 APPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
A P S+ + DP+ AL Y + + F W+DV+G A+QL E
Sbjct: 334 AIPHSIYAVVLDPLGALEYAVVFIVLSILFGILWVDVAGLDPATQAQQLVE 384
>UniRef50_A5K1C6 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 4108
Score = 33.9 bits (74), Expect = 3.5
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 72 TVNTGRGTEFEG-AVIALFHLLATRPDKVRALREAF-YRQNLPNLMNL 209
T GRGT+ A I + +LLA+ PD++ A R+ + +R N NL N+
Sbjct: 1934 TRTEGRGTQINSYASIIIRNLLASNPDRIEATRDGWRFRINTSNLDNI 1981
>UniRef50_A2ZMZ3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 546
Score = 33.1 bits (72), Expect = 6.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFS 65
SG+SLF A N C I WKAF+
Sbjct: 166 SGVSLFAAANCCACIFWKAFT 186
>UniRef50_Q8ZT51 Cluster: Preprotein translocase secY subunit; n=4;
Pyrobaculum|Rep: Preprotein translocase secY subunit -
Pyrobaculum aerophilum
Length = 459
Score = 32.7 bits (71), Expect = 8.0
Identities = 14/49 (28%), Positives = 31/49 (63%)
Frame = +2
Query: 254 LRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLA 400
++V++P+ + +YRG + P++ Y S +PII + +L ++ Q+L+
Sbjct: 267 MKVNIPVTAGQYRGIKFTIPLRFVYVSVLPIIFTT---YSLLLVGQLLS 312
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,435,188
Number of Sequences: 1657284
Number of extensions: 11873004
Number of successful extensions: 32558
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 31568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32544
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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