Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30826
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0140 + 5864612-5864955,5865154-5865381,5865460-5865814,586... 156 1e-38
09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640... 144 4e-35
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544... 144 4e-35
09_04_0704 + 19623046-19623386,19623583-19623792,19623872-196242... 108 4e-24
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 94 1e-19
09_04_0707 + 19645471-19646112 64 9e-11
12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388 59 4e-09
12_02_1195 + 26906814-26907121,26907771-26907992,26908913-269091... 33 0.20
12_02_1185 + 26786543-26786545,26786676-26786686,26787032-267872... 31 1.1
11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,473... 29 2.5
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 29 2.5
>03_02_0140 +
5864612-5864955,5865154-5865381,5865460-5865814,
5865899-5866023,5866150-5866285,5866382-5866621
Length = 475
Score = 156 bits (379), Expect = 1e-38
Identities = 81/121 (66%), Positives = 90/121 (74%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
SGISLFIATNICE I+WKAFSP T+N+GRG EFEGAVIALFHLL TR DKVRALREAFYR
Sbjct: 180 SGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYR 239
Query: 183 QNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTLLIYPSFCSLL 362
QNLPN+ NLLATVLVF IVIYFQG + P V + Q +Y L Y S ++
Sbjct: 240 QNLPNVTNLLATVLVFLIVIYFQGFRVVLP----VRSKNARGQQGSYPIKLFYTSNMPII 295
Query: 363 L 365
L
Sbjct: 296 L 296
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/67 (64%), Positives = 54/67 (80%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
G RV LP++S RGQ SYPIKLFYTSN+PIIL SAL++NLY ISQ+L ++SGNFLVN
Sbjct: 263 GFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLYFISQLLYRRYSGNFLVN 322
Query: 431 VLGVWAD 451
++G W +
Sbjct: 323 LIGKWKE 329
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/49 (73%), Positives = 41/49 (83%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
P SLA + +P HAL YV+FML +CA FSKTWI+VSGSSAKDVAKQLKE
Sbjct: 349 PSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKE 397
>09_02_0577 -
10862976-10863215,10863653-10863788,10863906-10864030,
10864132-10864516,10864571-10864798,10864976-10865319
Length = 485
Score = 144 bits (350), Expect = 4e-35
Identities = 81/131 (61%), Positives = 90/131 (68%), Gaps = 10/131 (7%)
Frame = +3
Query: 3 SGISLFIATNIC----------ETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDK 152
SGISLFIATNIC E I+WKAFSP T+N+GRG EFEGAVIALFHLL TR DK
Sbjct: 180 SGISLFIATNICLLLVNLLLHSENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDK 239
Query: 153 VRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTL 332
VRALREAFYRQNLPN+ NLLATVLVF IVIYFQG + P V + Q +Y
Sbjct: 240 VRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLP----VRSKNARGQQGSYPIK 295
Query: 333 LIYPSFCSLLL 365
L Y S ++L
Sbjct: 296 LFYTSNMPIIL 306
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
G RV LP++S RGQ SYPIKLFYTSN+PIIL SAL++NLY ISQ+L ++SGNFLVN
Sbjct: 273 GFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLYFISQLLYRRYSGNFLVN 332
Query: 431 VLGVWAD 451
+LG W +
Sbjct: 333 LLGKWKE 339
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/49 (73%), Positives = 41/49 (83%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
P SLA + +P HAL YV+FML +CA FSKTWI+VSGSSAKDVAKQLKE
Sbjct: 359 PSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKE 407
>09_02_0576 -
10853361-10853600,10854033-10854168,10854285-10854409,
10854487-10854871,10854934-10855161,10855332-10855675
Length = 485
Score = 144 bits (350), Expect = 4e-35
Identities = 81/131 (61%), Positives = 90/131 (68%), Gaps = 10/131 (7%)
Frame = +3
Query: 3 SGISLFIATNIC----------ETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDK 152
SGISLFIATNIC E I+WKAFSP T+N+GRG EFEGAVIALFHLL TR DK
Sbjct: 180 SGISLFIATNICLLLVNLLLHSENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDK 239
Query: 153 VRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTL 332
VRALREAFYRQNLPN+ NLLATVLVF IVIYFQG + P V + Q +Y
Sbjct: 240 VRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLP----VRSKNARGQQGSYPIK 295
Query: 333 LIYPSFCSLLL 365
L Y S ++L
Sbjct: 296 LFYTSNMPIIL 306
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
G RV LP++S RGQ SYPIKLFYTSN+PIIL SAL++NLY ISQ+L ++SGNFLVN
Sbjct: 273 GFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLYFISQLLYRRYSGNFLVN 332
Query: 431 VLGVWAD 451
+LG W +
Sbjct: 333 LLGKWKE 339
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/49 (73%), Positives = 41/49 (83%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
P SLA + +P HAL YV+FML +CA FSKTWI+VSGSSAKDVAKQLKE
Sbjct: 359 PSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKE 407
>09_04_0704 +
19623046-19623386,19623583-19623792,19623872-19624223,
19624320-19624444,19624578-19624668,19624817-19625050
Length = 450
Score = 108 bits (259), Expect = 4e-24
Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVN-TGRGTEFEGAVIALFHLLATRPDKVRALREAFY 179
SGISLF ATNIC I+WKAFSP +V + EFEGAVIA HLL TR DK+ A+ +AFY
Sbjct: 173 SGISLFTATNICVNILWKAFSPMSVMYPEQSPEFEGAVIAWVHLLMTRTDKLSAMSKAFY 232
Query: 180 RQNLPNLMNLLATVLVFAIVIYFQGSV*ICP 272
RQNLPN++N LAT L + I+FQG + P
Sbjct: 233 RQNLPNIINFLATCLFVPLAIFFQGFYIVLP 263
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/65 (38%), Positives = 37/65 (56%)
Frame = +2
Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
G + LP+++ R Y IKL + P++L L+ YV S++L K+SGN LVN
Sbjct: 257 GFYIVLPVRTRRNFQAYCH--IKLSHFLYGPVVLHRLLLPLPYVASKVLYKKYSGNTLVN 314
Query: 431 VLGVW 445
+LG W
Sbjct: 315 LLGKW 319
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFS 600
P LA + DP HA +YV F+L SC F S
Sbjct: 341 PPILADLHRDPFHAFIYVAFVLISCVFIS 369
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 93.9 bits (223), Expect = 1e-19
Identities = 60/132 (45%), Positives = 74/132 (56%), Gaps = 4/132 (3%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
SGISLF A N CE +V +A SPAT++ GRG EF GAV A HLLATR K+ A+REAF+R
Sbjct: 189 SGISLFTAANTCEGVVTRALSPATMDRGRGAEFVGAVTAAAHLLATRARKLSAVREAFFR 248
Query: 183 ----QNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTLLIYPSF 350
+LP+L L AT VF +Y QG P S H YS L+Y S
Sbjct: 249 GGGGGSLPDLRGLAATCAVFLAAVYLQGVRVALPVRPRNAPRS--HRGGAYSVRLLYTSG 306
Query: 351 CSLLLSPIFMSS 386
++L +SS
Sbjct: 307 MPVVLLSSAVSS 318
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +2
Query: 218 CSCLCYSDILPGLRVDLPIK--SARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQ 391
C+ + L G+RV LP++ +A + +Y ++L YTS +P++L S+ VS+LYV+SQ
Sbjct: 265 CAVFLAAVYLQGVRVALPVRPRNAPRSHRGGAYSVRLLYTSGMPVVLLSSAVSSLYVVSQ 324
Query: 392 ML 397
L
Sbjct: 325 AL 326
>09_04_0707 + 19645471-19646112
Length = 213
Score = 64.1 bits (149), Expect = 9e-11
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +2
Query: 218 CSCLCYSDILPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 397
C L + L G RV LP++S RG+ + PIKL YTS +P++L SA VS+LY +SQ+L
Sbjct: 7 CVVLLATVFLEGFRVMLPLRSRDARGRQLALPIKLLYTSTMPVVLHSAAVSSLYTVSQLL 66
Query: 398 AVKFSGNFLVNVLGVW 445
F ++LG W
Sbjct: 67 ---HYSRFAGSLLGTW 79
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 502 LPAPPESLAHIAHDPV---HALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQL 654
+P P +A+ P HA Y +L SC FS W++VS SSA+DVA+QL
Sbjct: 87 IPVPVGGVAYYVTPPAGLSHAAAYAASLLASCTLFSGAWVEVSRSSAQDVARQL 140
>12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388
Length = 483
Score = 58.8 bits (136), Expect = 4e-09
Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPATVN-TGRGTEFEGAVIALFHLLATRP----DKVRALR 167
S SL IATN CE V FSP + G G EFEG V A+ H +A P K AL
Sbjct: 189 SAASLLIATNACERAVSHLFSPVKLRLAGAGPEFEGPVFAVTHRVAAAPPSWRHKAGALL 248
Query: 168 EAFYRQNLPNLMNLLATVLVFAIVI 242
R +LPNL N + T ++F + +
Sbjct: 249 FTLLRLDLPNLSNYMTTCVMFVLAV 273
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +2
Query: 275 KSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVNVLGVWAD 451
+S RG PIKL YTS +PI+L ++ VS V+ + G F+VN+LG W D
Sbjct: 285 RSRPRRGTDEFVPIKLLYTSAMPIMLHASAVSAFCVLHLHSSGGGGGGFVVNLLGRWKD 343
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 511 PPESLAHIAHDPVHALL-YVLFMLGSCAFFSKTWIDVSGSSAKD 639
PP L + +H LL + +F++ SC S W + S SSA++
Sbjct: 361 PPSKLL-VDPGLIHELLIHSVFVVASCTLLSMAWAEASRSSARE 403
>12_02_1195 +
26906814-26907121,26907771-26907992,26908913-26909153,
26909512-26909642,26910336-26910474,26910600-26910810,
26911371-26911759
Length = 546
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFS 65
SG+SLF A N C I WKAF+
Sbjct: 166 SGVSLFAAANCCACIFWKAFT 186
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAK 636
P S I +LLY +F+L CAF S V S+K
Sbjct: 299 PPSFGEIVTGDPGSLLYAVFLLTGCAFLSLFCFKVCAKSSK 339
>12_02_1185 +
26786543-26786545,26786676-26786686,26787032-26787262,
26787892-26788012,26788263-26788393,26788718-26788760,
26788963-26789220
Length = 265
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 3 SGISLFIATNICETIVWKAFSPA 71
SG+SLF A N C I WKA + A
Sbjct: 71 SGLSLFSAANCCACIFWKALNHA 93
>11_01_0595 +
4732330-4732723,4732839-4732903,4733023-4733143,
4733596-4733687,4733850-4733915,4734106-4734125,
4734147-4734239,4734358-4734445,4734570-4734635,
4734728-4734843,4735410-4735500,4736133-4736234,
4736342-4736425,4736551-4736643,4736728-4736823,
4736914-4736999,4737528-4737606,4737675-4737788,
4737890-4737985,4738060-4738123,4738221-4738510,
4738901-4738956,4739060-4739177,4739287-4739367,
4739683-4739762,4740001-4740055,4740142-4740211,
4740279-4740468,4740567-4740690,4741055-4741129,
4741217-4741390
Length = 1112
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 245 LPGLRVDLPIK---SARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVK 406
LP +RVDLPI+ +AR + QY ++ + P+++ + V + +S +L +
Sbjct: 516 LPNIRVDLPIQAFATARGKWQYVRAEVESMFHLGRPVLVGTTSVESSEYLSDLLKAR 572
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 211 SRFIRLGRFCR*KASRRARTLSGRVANRWNNAITAPSNSVPRP 83
+R R FCR AS SG +R N +T+P+NS P P
Sbjct: 834 TRLRRYASFCRTLASHAVGASSGSGNSR--NMVTSPTNSSPSP 874
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,746,030
Number of Sequences: 37544
Number of extensions: 344419
Number of successful extensions: 991
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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