Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30826
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)             162   2e-40
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        32   0.48 
SB_5622| Best HMM Match : DUF6 (HMM E-Value=2.6e-12)                   30   1.5  
SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1)                    29   2.5  

>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score =  162 bits (394), Expect = 2e-40
 Identities = 76/84 (90%), Positives = 79/84 (94%)
 Frame = +3

Query: 3    SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
            SGISLFIATNICETIVWKAFSPAT+NTGRGTEFEGAVIALFHLLATR DKVR LREAFYR
Sbjct: 880  SGISLFIATNICETIVWKAFSPATINTGRGTEFEGAVIALFHLLATRTDKVRGLREAFYR 939

Query: 183  QNLPNLMNLLATVLVFAIVIYFQG 254
            QNLPNL NL+AT+ VF IVIYFQG
Sbjct: 940  QNLPNLTNLIATIFVFGIVIYFQG 963



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 35/37 (94%), Positives = 35/37 (94%)
 Frame = +2

Query: 251  GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 361
            G RVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQ A
Sbjct: 963  GFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQVA 999


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 275 KSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 373
           KS RY   Y+ YP+  +  SN P+ L+ A+ SN
Sbjct: 131 KSERYESAYNKYPV--YIRSNYPVYLEVAVTSN 161


>SB_5622| Best HMM Match : DUF6 (HMM E-Value=2.6e-12)
          Length = 224

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSA 633
           PE   HI  + V+ ++Y +F+  +  +   TW ++  SS+
Sbjct: 121 PEKFHHIPREEVYPIVYAIFIASALCYLLITWCNMQISSS 160


>SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1)
          Length = 505

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 168 EAFYRQNLPNLMNLLATVLVFAIVIYFQGSV*ICPSS 278
           + F++ +   L N+L  VLVF +   F+  V  CPSS
Sbjct: 193 KGFFKNSRTTLKNVLVLVLVFGMEQIFEKDVFECPSS 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,010,491
Number of Sequences: 59808
Number of extensions: 390692
Number of successful extensions: 823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)