Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30826
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical p...   167   8e-42
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily ass...    28   5.1  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    28   5.1  
AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    28   5.1  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     28   5.1  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     28   5.1  
Z82267-2|CAB05190.1|  410|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical
           protein Y57G11C.15 protein.
          Length = 473

 Score =  167 bits (405), Expect = 8e-42
 Identities = 79/84 (94%), Positives = 82/84 (97%)
 Frame = +3

Query: 3   SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
           SGISLFIATNICETIVWKAFSPAT+NTGRGTEFEGAVIALFHLLATR DKVRALREAFYR
Sbjct: 177 SGISLFIATNICETIVWKAFSPATMNTGRGTEFEGAVIALFHLLATRSDKVRALREAFYR 236

Query: 183 QNLPNLMNLLATVLVFAIVIYFQG 254
           QNLPNLMNL+AT LVFA+VIYFQG
Sbjct: 237 QNLPNLMNLMATFLVFAVVIYFQG 260



 Score =  129 bits (311), Expect = 2e-30
 Identities = 64/86 (74%), Positives = 67/86 (77%)
 Frame = +2

Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
           G RVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLA KF GNF +N
Sbjct: 260 GFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAGKFGGNFFIN 319

Query: 431 VLGVWADXXXXXXXXXXXXXXLCYYL 508
           +LG W+D              LCYYL
Sbjct: 320 LLGTWSD---NTGYRSYPTGGLCYYL 342



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 41/51 (80%), Positives = 47/51 (92%)
 Frame = +1

Query: 508 APPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
           +PPESL HI  DP+H ++Y++FMLGSCAFFSKTWIDVSGSSAKDVAKQLKE
Sbjct: 343 SPPESLGHIFEDPIHCIIYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 393


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +3

Query: 174 FYRQNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTLLIYPSFC 353
           F+ Q + +L+  L+ +L   + I+ + S  +   + + ++DS++    N S LL+Y  F 
Sbjct: 174 FHEQVVFSLIETLSLLLFIRLYIWKRSSHLLHKVTQIALLDSLMLLLFNISPLLLYSYFS 233

Query: 354 SLLL 365
           S L+
Sbjct: 234 STLV 237


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 647  FATSLAEEPDTSIQVFEKKAQEPSM 573
            FA SL + P+T++Q+F+  ++ P +
Sbjct: 1931 FADSLRDSPNTALQMFDSSSENPEL 1955


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 647  FATSLAEEPDTSIQVFEKKAQEPSM 573
            FA SL + P+T++Q+F+  ++ P +
Sbjct: 1939 FADSLRDSPNTALQMFDSSSENPEL 1963


>U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform c protein.
          Length = 860

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 239 DILPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVIS 388
           ++LP   + LP  SA      SS+P KL   +++  +L + L S++ + S
Sbjct: 649 NLLPSAHLGLPASSAIVHRLLSSFPRKLRPLTHLTTVLPTRLASDISLTS 698


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 239  DILPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVIS 388
            ++LP   + LP  SA      SS+P KL   +++  +L + L S++ + S
Sbjct: 2320 NLLPSAHLGLPASSAIVHRLLSSFPRKLRPLTHLTTVLPTRLASDISLTS 2369


>AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical
           protein VF36H2L.1 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 532 IAHDPVHALLYVL---FMLGSCAFFSKTWIDVS 621
           IAHDPV  +L+ L   F L S  F S  W+ +S
Sbjct: 25  IAHDPVRIILFFLGSFFWLVSLLFSSLAWLGLS 57


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 647  FATSLAEEPDTSIQVFEKKAQEPSM 573
            FA SL + P+T++Q+F+  ++ P +
Sbjct: 1939 FADSLRDSPNTALQMFDSSSENPEL 1963


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 239  DILPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVIS 388
            ++LP   + LP  SA      SS+P KL   +++  +L + L S++ + S
Sbjct: 2262 NLLPSAHLGLPASSAIVHRLLSSFPRKLRPLTHLTTVLPTRLASDISLTS 2311


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 239  DILPGLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVIS 388
            ++LP   + LP  SA      SS+P KL   +++  +L + L S++ + S
Sbjct: 2444 NLLPSAHLGLPASSAIVHRLLSSFPRKLRPLTHLTTVLPTRLASDISLTS 2493


>Z82267-2|CAB05190.1|  410|Caenorhabditis elegans Hypothetical
           protein F38C2.4 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 102 EGAVIALFHLLATRPDKVRALREAFYRQNLPNLMN-LLATVLVFAIVIYF 248
           E   I L  L+ T PD +     A  R  L +L   LL T++ F ++ YF
Sbjct: 83  ESTKIYLDFLIKTSPDGINKALPASMRYKLGSLSTVLLVTLICFTLLYYF 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,875
Number of Sequences: 27780
Number of extensions: 287765
Number of successful extensions: 749
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)