Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30826
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/51 (21%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 514 PESLAHIAHDPVHALLYVLFML--GSCAFFSKTWIDVSGSSAKDVAKQLKE 660
           P+ + H+A   ++  L++   +  G+C+   + + +V+ +  KD+ K++ E
Sbjct: 393 PDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILE 443


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = +3

Query: 207 LLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTLLIYPSFCSLLLSPIFMSS 386
           ++  + V   VI+  G V    + +++  +  +HT +NY    +  S   LL+S +    
Sbjct: 52  IVLPITVIYAVIFVTGLVGNVSTCVVIARNKSMHTATNYYLFSLAVSDLLLLISGLPPEI 111

Query: 387 HRCW 398
           +  W
Sbjct: 112 YYIW 115


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 77  NSGW*KCLPYNGFTDVC 27
           NSG   C+P+  +T VC
Sbjct: 143 NSGTILCVPFTTYTPVC 159


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 368 SNLYVISQMLAVKFSGNFLVNVLGVWA 448
           + L +++Q+   K+ GN +VN +  +A
Sbjct: 313 TTLNMLTQVECYKYYGNIMVNAMCAYA 339


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 650  CFATSLAEEPDTSIQVFEKKAQEPSM 573
            C  + +   P+T +   EK  Q+P M
Sbjct: 1242 CIGSQIMVSPETLLSYDEKMDQKPKM 1267


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 656 FSCFATSLAEEPDTSIQVFEKKAQE 582
           F+C AT+     DTSI +  ++  E
Sbjct: 853 FTCVATNAFGSDDTSINMIVQEVPE 877


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,116
Number of Sequences: 438
Number of extensions: 3274
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)