Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30826
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29310.1 68414.m03583 protein transport protein sec61, putati...   153   1e-37
At2g34250.1 68415.m04190 protein transport protein sec61, putati...   152   2e-37
At1g78720.1 68414.m09175 protein transport protein sec61, putati...   151   5e-37
At5g41920.1 68418.m05104 scarecrow transcription factor family p...    29   2.7  
At1g53285.1 68414.m06039 expressed protein                             29   2.7  

>At1g29310.1 68414.m03583 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score =  153 bits (371), Expect = 1e-37
 Identities = 78/128 (60%), Positives = 93/128 (72%)
 Frame = +3

Query: 3   SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
           SGISLFIATNICE+I+WKAFSP T+NTGRG EFEGAVIALFH+L T+ +KV ALR+AFYR
Sbjct: 180 SGISLFIATNICESIIWKAFSPTTINTGRGAEFEGAVIALFHMLITKSNKVAALRQAFYR 239

Query: 183 QNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTLLIYPSFCSLL 362
           QNLPN+ NLLATVL+F IVIYFQG   + P    V   S    Q +Y   L Y S   ++
Sbjct: 240 QNLPNVTNLLATVLIFLIVIYFQGFRVVLP----VRSKSARGQQGSYPIKLFYTSNMPII 295

Query: 363 LSPIFMSS 386
           L    +S+
Sbjct: 296 LQSALVSN 303



 Score =  101 bits (241), Expect = 6e-22
 Identities = 48/67 (71%), Positives = 54/67 (80%)
 Frame = +2

Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
           G RV LP++S   RGQ  SYPIKLFYTSN+PIILQSALVSNLY ISQ+L  KFSGNF VN
Sbjct: 263 GFRVVLPVRSKSARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFVN 322

Query: 431 VLGVWAD 451
           +LG W +
Sbjct: 323 LLGQWKE 329



 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 34/49 (69%), Positives = 40/49 (81%)
 Frame = +1

Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
           P S A +A  P HAL Y++FML +CA FSKTWI+VSGSSA+DVAKQLKE
Sbjct: 349 PASFADMAAHPFHALFYIVFMLTACALFSKTWIEVSGSSARDVAKQLKE 397


>At2g34250.1 68415.m04190 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score =  152 bits (368), Expect = 2e-37
 Identities = 77/128 (60%), Positives = 93/128 (72%)
 Frame = +3

Query: 3   SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
           SGISLFIATNICE+I+WKAFSP T+NTGRG EFEGAVIALFH+L T+ +KV ALR+AFYR
Sbjct: 180 SGISLFIATNICESIIWKAFSPTTINTGRGAEFEGAVIALFHMLITKSNKVAALRQAFYR 239

Query: 183 QNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTLLIYPSFCSLL 362
           QNLPN+ NLLATVL+F IVIYFQG   + P    V   +    Q +Y   L Y S   ++
Sbjct: 240 QNLPNVTNLLATVLIFLIVIYFQGFRVVLP----VRSKNARGQQGSYPIKLFYTSNMPII 295

Query: 363 LSPIFMSS 386
           L    +S+
Sbjct: 296 LQSALVSN 303



 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/67 (71%), Positives = 54/67 (80%)
 Frame = +2

Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
           G RV LP++S   RGQ  SYPIKLFYTSN+PIILQSALVSNLY ISQ+L  KFSGNF VN
Sbjct: 263 GFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFVN 322

Query: 431 VLGVWAD 451
           +LG W +
Sbjct: 323 LLGQWKE 329



 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = +1

Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
           P S + +A  P HAL Y++FML +CA FSKTWI+VSGSSA+DVAKQLKE
Sbjct: 349 PASFSDMAAHPFHALFYIVFMLTACALFSKTWIEVSGSSARDVAKQLKE 397


>At1g78720.1 68414.m09175 protein transport protein sec61, putative
           similar to SP|P38377 Protein transport protein Sec61
           alpha subunit isoform 1 (Sec61 alpha- 1) {Canis
           familiaris}; contains Pfam profile PF00344: eubacterial
           secY protein
          Length = 475

 Score =  151 bits (365), Expect = 5e-37
 Identities = 77/128 (60%), Positives = 93/128 (72%)
 Frame = +3

Query: 3   SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYR 182
           SGISLFIATNICE+I+WKAFSP T+N+GRG +FEGAVIALFHLL TR DKVRALREAF+R
Sbjct: 180 SGISLFIATNICESIIWKAFSPTTINSGRGAQFEGAVIALFHLLITRTDKVRALREAFFR 239

Query: 183 QNLPNLMNLLATVLVFAIVIYFQGSV*ICPSSLLVIVDSILHTQSNYSTLLIYPSFCSLL 362
           QNLPN+ NL ATVL+F IVIYFQG   + P    V   +    + +Y   L Y S   ++
Sbjct: 240 QNLPNVTNLHATVLIFLIVIYFQGFRVVLP----VRSKNARGQRGSYPIKLFYTSNMPII 295

Query: 363 LSPIFMSS 386
           L    +S+
Sbjct: 296 LQSALVSN 303



 Score =   99 bits (238), Expect = 1e-21
 Identities = 46/67 (68%), Positives = 54/67 (80%)
 Frame = +2

Query: 251 GLRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVN 430
           G RV LP++S   RGQ  SYPIKLFYTSN+PIILQSALVSN+Y ISQ+L  KF GNFLVN
Sbjct: 263 GFRVVLPVRSKNARGQRGSYPIKLFYTSNMPIILQSALVSNIYFISQILYRKFGGNFLVN 322

Query: 431 VLGVWAD 451
           ++G W +
Sbjct: 323 LIGTWKE 329



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/49 (69%), Positives = 41/49 (83%)
 Frame = +1

Query: 514 PESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKE 660
           P SLA +A  P HAL Y++FML +CA FSKTWI+VSGSSAKDVA+QL+E
Sbjct: 349 PSSLAEMATHPFHALFYLVFMLAACALFSKTWIEVSGSSAKDVARQLRE 397


>At5g41920.1 68418.m05104 scarecrow transcription factor family
           protein
          Length = 405

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = +3

Query: 117 ALFHLLATRPDKVRALR 167
           ALFH+LA+RP K+R++R
Sbjct: 167 ALFHILASRPRKLRSIR 183


>At1g53285.1 68414.m06039 expressed protein
          Length = 69

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 213 LVDSSGWVDFVDRRLHGELALCLDVLPTDGTMLSQHPRILCRDQC 79
           LV     VD V+ RL    A C+D+  T       HP   C+D+C
Sbjct: 5   LVVMVAMVDDVEGRL--SYATCMDLCETKCNFFFTHPEKYCKDKC 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,657
Number of Sequences: 28952
Number of extensions: 264282
Number of successful extensions: 663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)