Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30825
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   102   2e-23
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   102   2e-23
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    29   0.21 
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   2.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   2.0  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    25   3.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.0  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  102 bits (244), Expect = 2e-23
 Identities = 46/81 (56%), Positives = 58/81 (71%)
 Frame = +2

Query: 2   DLVKTARFKELAPYDPDWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCR 181
           D+VKT   KELAPYDPDW+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH   
Sbjct: 35  DIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRD 94

Query: 182 SSGSIARKALQSLEALKLVEK 244
            SGS+ RK +QSLE + ++EK
Sbjct: 95  GSGSVQRKVVQSLEKIGVLEK 115



 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 184 IRQYCTQGFAIVGGIEAC*ESSGRGRILTTQGRRDLDRI 300
           +++   Q    +G +E   +S   GR ++ QG+RDLDRI
Sbjct: 99  VQRKVVQSLEKIGVLE---KSDNGGRRISQQGQRDLDRI 134


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  102 bits (244), Expect = 2e-23
 Identities = 46/81 (56%), Positives = 58/81 (71%)
 Frame = +2

Query: 2   DLVKTARFKELAPYDPDWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCR 181
           D+VKT   KELAPYDPDW+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH   
Sbjct: 35  DIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRD 94

Query: 182 SSGSIARKALQSLEALKLVEK 244
            SGS+ RK +QSLE + ++EK
Sbjct: 95  GSGSVQRKVVQSLEKIGVLEK 115



 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 184 IRQYCTQGFAIVGGIEAC*ESSGRGRILTTQGRRDLDRI 300
           +++   Q    +G +E   +S   GR ++ QG+RDLDRI
Sbjct: 99  VQRKVVQSLEKIGVLE---KSDNGGRRISQQGQRDLDRI 134


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -3

Query: 311 TWAAILSRSRLPCVVRMRPRPELSQQASMPPTIAKPCVQ 195
           +WAAI ++S + C +++   PE+S ++S+P    +P  Q
Sbjct: 247 SWAAICNKSYM-CNIQLEQSPEVSVKSSLPKYSNEPIFQ 284


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 139 TKDLGDSLDSNR*ANVNMTKDGSSTHIEPIRVIRSQL 29
           ++D+G +L+ N+ +N+  TK+ S+  I+       QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 15  QLASKSWLRMTLIGSMCVEL 74
           +L SKSWL +  +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 265 ECDHVLNFLNKLQC 224
           +C H++N++ KL+C
Sbjct: 363 KCKHIINYMRKLEC 376


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 85   SYLHSLTCWSQDCHQDLWW 141
            S+ + +T + Q CH++LW+
Sbjct: 1149 SFQNLVTVFCQSCHKELWY 1167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,224
Number of Sequences: 5004
Number of extensions: 26598
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)