BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30825 (409 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 108 1e-24 01_06_1023 + 33890733-33891034,33891171-33891258,33894253-338945... 29 1.9 11_06_0513 + 24466131-24469487 27 4.3 11_01_0645 + 5185341-5185568,5185773-5185823 27 4.3 05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 27 4.3 12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29... 27 7.6 08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 27 7.6 07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891 27 7.6 06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647... 27 7.6 06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525... 27 7.6 >03_04_0129 + 17520753-17520842,17521651-17521741,17521887-17522070, 17522149-17522224 Length = 146 Score = 108 bits (260), Expect = 1e-24 Identities = 46/80 (57%), Positives = 61/80 (76%) Frame = +2 Query: 2 DLVKTARFKELAPYDPDWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCR 181 D+VKTARFKEL PYDPDW+Y R A+I R IY+R +GV KI+GGR+RNG P HFC+ Sbjct: 38 DIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCK 97 Query: 182 SSGSIARKALQSLEALKLVE 241 SSG+I+R LQ L+ + +++ Sbjct: 98 SSGAISRNILQQLQKMGIID 117 Score = 29.1 bits (62), Expect = 1.4 Identities = 10/15 (66%), Positives = 15/15 (100%) Frame = +1 Query: 256 GRILTTQGRRDLDRI 300 GR++T+QGRRDLD++ Sbjct: 123 GRLITSQGRRDLDQV 137 >01_06_1023 + 33890733-33891034,33891171-33891258,33894253-33894522, 33894616-33894724,33894833-33894950,33895051-33895183, 33895306-33895493,33895566-33895752,33895797-33895841, 33895850-33895917,33896093-33896186,33896284-33896475, 33896656-33896736,33897363-33897425 Length = 645 Score = 28.7 bits (61), Expect = 1.9 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -3 Query: 332 CCLAFRRTWAAILSRSRLPCVVRMRPRPELSQQASMPPTI 213 CC + + + RSR P V+ + RP S + +PP++ Sbjct: 479 CCYNWMEMDLSSVDRSRTPWVIFIGHRPMYSSSSGIPPSV 518 >11_06_0513 + 24466131-24469487 Length = 1118 Score = 27.5 bits (58), Expect = 4.3 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Frame = +2 Query: 74 AILRHIYIRSPVGVKTVTKIFGGRKRN-GVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 250 ++ H +R+ + ++T + G+K PS +CR + LQ+ + KL EKV+ Sbjct: 578 SLTAHTDLRTLILLRTQKMVLSGQKSEIKEIPSDYCRYLTYLRVLDLQATKINKLPEKVE 637 Query: 251 DVVAFSPHKVDETLTESLPRFV*R 322 + + +T + LP + R Sbjct: 638 MLSNLRYLNLSQTDIDKLPESIGR 661 >11_01_0645 + 5185341-5185568,5185773-5185823 Length = 92 Score = 27.5 bits (58), Expect = 4.3 Identities = 11/39 (28%), Positives = 20/39 (51%) Frame = +2 Query: 89 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 205 ++ +SP + + + GR+R G P R +G IA + Sbjct: 18 VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56 >05_07_0173 + 28140484-28140869,28141079-28141481,28141719-28141781, 28142350-28142535,28144695-28145076,28145689-28145780, 28145988-28146737,28146969-28147100,28147149-28147247, 28147977-28148132,28150187-28150317,28150798-28151254, 28151327-28151668,28152137-28153001,28153112-28153170, 28153806-28154261,28154835-28154873,28155016-28155201 Length = 1727 Score = 27.5 bits (58), Expect = 4.3 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = +2 Query: 80 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRS---SGSIARKALQSLEALKLVEKVQ 250 LRH K + G + +GVT + C+S G+ +QSL++ KL+ + Sbjct: 107 LRHSKSEMSAVQKKALQRVGASRTSGVTQNDLCKSFGMEGNNFHYIVQSLQSQKLIVRRS 166 Query: 251 DVVAF 265 ++ F Sbjct: 167 TIIKF 171 >12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-297173, 297391-297631 Length = 314 Score = 26.6 bits (56), Expect = 7.6 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 Query: 162 HLHISAGHQAVLHARLCNRW 221 H HI+AG +L +R+ N W Sbjct: 161 HRHITAGSGTILQSRVANAW 180 >08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-269805, 269895-270098,271532-271664,271810-271881,273106-273168, 273252-275034,275169-275217 Length = 1229 Score = 26.6 bits (56), Expect = 7.6 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +3 Query: 51 IGSMCVELPSFVIFTFAHLLESRLSPRSLVGANVMELHLHISAGHQAVL 197 +G++ + LP F+ + LSPR L+ A V EL L GH A L Sbjct: 162 LGNLVLALPGFLSLVAVRSIPQELSPR-LLWAPVFEL-LADHRGHPAFL 208 >07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891 Length = 1274 Score = 26.6 bits (56), Expect = 7.6 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = -1 Query: 157 SITFAPTKDLGDSLDSNR*ANVNMTKDG-SSTHIEPIRVIRSQ 32 + +PT D+ + DS +N T DG +S HI + + SQ Sbjct: 104 TFVISPTSDMSSAQDSQYLGLLNKTSDGKASNHIFAVELDSSQ 146 >06_03_0203 - 17863130-17863940,17864023-17864341,17864653-17864716, 17864811-17864929,17865515-17865640,17866626-17866632, 17867421-17867562,17867720-17867738,17868082-17868292 Length = 605 Score = 26.6 bits (56), Expect = 7.6 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -3 Query: 251 PELSQQASMPPTIAKPCVQYCLMTCRNVK 165 P+L ++ + T P V++C MTCR ++ Sbjct: 379 PKLEERREILGTRLLPLVRFCHMTCRKLR 407 >06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192, 5257369-5257497,5257585-5257658,5257745-5257816, 5257901-5257969,5258059-5258130,5258208-5258279, 5258512-5258583,5258735-5258806,5258887-5258958, 5259050-5259121,5259203-5259274,5259427-5259498, 5259599-5259670,5259764-5259832,5260072-5260143, 5260428-5260499,5260579-5260650,5260919-5260990, 5261015-5261161,5261249-5261378,5262212-5262290 Length = 931 Score = 26.6 bits (56), Expect = 7.6 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 281 LPCVVRMRPRPELSQQASMPPTIAKP 204 L C+VR P P+ +QQ +MP A P Sbjct: 865 LDCLVRPDPPPKSAQQLAMPQRPAVP 890 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,916,555 Number of Sequences: 37544 Number of extensions: 193695 Number of successful extensions: 572 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 564 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 572 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 718652880 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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