Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30825
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 108 1e-24
01_06_1023 + 33890733-33891034,33891171-33891258,33894253-338945... 29 1.9
11_06_0513 + 24466131-24469487 27 4.3
11_01_0645 + 5185341-5185568,5185773-5185823 27 4.3
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 27 4.3
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29... 27 7.6
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 27 7.6
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891 27 7.6
06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647... 27 7.6
06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525... 27 7.6
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 108 bits (260), Expect = 1e-24
Identities = 46/80 (57%), Positives = 61/80 (76%)
Frame = +2
Query: 2 DLVKTARFKELAPYDPDWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCR 181
D+VKTARFKEL PYDPDW+Y R A+I R IY+R +GV KI+GGR+RNG P HFC+
Sbjct: 38 DIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCK 97
Query: 182 SSGSIARKALQSLEALKLVE 241
SSG+I+R LQ L+ + +++
Sbjct: 98 SSGAISRNILQQLQKMGIID 117
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +1
Query: 256 GRILTTQGRRDLDRI 300
GR++T+QGRRDLD++
Sbjct: 123 GRLITSQGRRDLDQV 137
>01_06_1023 +
33890733-33891034,33891171-33891258,33894253-33894522,
33894616-33894724,33894833-33894950,33895051-33895183,
33895306-33895493,33895566-33895752,33895797-33895841,
33895850-33895917,33896093-33896186,33896284-33896475,
33896656-33896736,33897363-33897425
Length = 645
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 332 CCLAFRRTWAAILSRSRLPCVVRMRPRPELSQQASMPPTI 213
CC + + + RSR P V+ + RP S + +PP++
Sbjct: 479 CCYNWMEMDLSSVDRSRTPWVIFIGHRPMYSSSSGIPPSV 518
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 74 AILRHIYIRSPVGVKTVTKIFGGRKRN-GVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 250
++ H +R+ + ++T + G+K PS +CR + LQ+ + KL EKV+
Sbjct: 578 SLTAHTDLRTLILLRTQKMVLSGQKSEIKEIPSDYCRYLTYLRVLDLQATKINKLPEKVE 637
Query: 251 DVVAFSPHKVDETLTESLPRFV*R 322
+ + +T + LP + R
Sbjct: 638 MLSNLRYLNLSQTDIDKLPESIGR 661
>11_01_0645 + 5185341-5185568,5185773-5185823
Length = 92
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 89 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 205
++ +SP + + + GR+R G P R +G IA +
Sbjct: 18 VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 80 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRS---SGSIARKALQSLEALKLVEKVQ 250
LRH K + G + +GVT + C+S G+ +QSL++ KL+ +
Sbjct: 107 LRHSKSEMSAVQKKALQRVGASRTSGVTQNDLCKSFGMEGNNFHYIVQSLQSQKLIVRRS 166
Query: 251 DVVAF 265
++ F
Sbjct: 167 TIIKF 171
>12_01_0035 -
295988-296408,296645-296813,296929-296965,297097-297173,
297391-297631
Length = 314
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 162 HLHISAGHQAVLHARLCNRW 221
H HI+AG +L +R+ N W
Sbjct: 161 HRHITAGSGTILQSRVANAW 180
>08_01_0036 -
267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 51 IGSMCVELPSFVIFTFAHLLESRLSPRSLVGANVMELHLHISAGHQAVL 197
+G++ + LP F+ + LSPR L+ A V EL L GH A L
Sbjct: 162 LGNLVLALPGFLSLVAVRSIPQELSPR-LLWAPVFEL-LADHRGHPAFL 208
>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
Length = 1274
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 157 SITFAPTKDLGDSLDSNR*ANVNMTKDG-SSTHIEPIRVIRSQ 32
+ +PT D+ + DS +N T DG +S HI + + SQ
Sbjct: 104 TFVISPTSDMSSAQDSQYLGLLNKTSDGKASNHIFAVELDSSQ 146
>06_03_0203 -
17863130-17863940,17864023-17864341,17864653-17864716,
17864811-17864929,17865515-17865640,17866626-17866632,
17867421-17867562,17867720-17867738,17868082-17868292
Length = 605
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 251 PELSQQASMPPTIAKPCVQYCLMTCRNVK 165
P+L ++ + T P V++C MTCR ++
Sbjct: 379 PKLEERREILGTRLLPLVRFCHMTCRKLR 407
>06_01_0721 -
5255422-5255790,5256287-5256660,5256845-5257192,
5257369-5257497,5257585-5257658,5257745-5257816,
5257901-5257969,5258059-5258130,5258208-5258279,
5258512-5258583,5258735-5258806,5258887-5258958,
5259050-5259121,5259203-5259274,5259427-5259498,
5259599-5259670,5259764-5259832,5260072-5260143,
5260428-5260499,5260579-5260650,5260919-5260990,
5261015-5261161,5261249-5261378,5262212-5262290
Length = 931
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 281 LPCVVRMRPRPELSQQASMPPTIAKP 204
L C+VR P P+ +QQ +MP A P
Sbjct: 865 LDCLVRPDPPPKSAQQLAMPQRPAVP 890
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,916,555
Number of Sequences: 37544
Number of extensions: 193695
Number of successful extensions: 572
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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