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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30825
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   108   1e-24
01_06_1023 + 33890733-33891034,33891171-33891258,33894253-338945...    29   1.9  
11_06_0513 + 24466131-24469487                                         27   4.3  
11_01_0645 + 5185341-5185568,5185773-5185823                           27   4.3  
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417...    27   4.3  
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29...    27   7.6  
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    27   7.6  
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891           27   7.6  
06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647...    27   7.6  
06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525...    27   7.6  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  108 bits (260), Expect = 1e-24
 Identities = 46/80 (57%), Positives = 61/80 (76%)
 Frame = +2

Query: 2   DLVKTARFKELAPYDPDWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCR 181
           D+VKTARFKEL PYDPDW+Y R A+I R IY+R  +GV    KI+GGR+RNG  P HFC+
Sbjct: 38  DIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCK 97

Query: 182 SSGSIARKALQSLEALKLVE 241
           SSG+I+R  LQ L+ + +++
Sbjct: 98  SSGAISRNILQQLQKMGIID 117



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 10/15 (66%), Positives = 15/15 (100%)
 Frame = +1

Query: 256 GRILTTQGRRDLDRI 300
           GR++T+QGRRDLD++
Sbjct: 123 GRLITSQGRRDLDQV 137


>01_06_1023 +
           33890733-33891034,33891171-33891258,33894253-33894522,
           33894616-33894724,33894833-33894950,33895051-33895183,
           33895306-33895493,33895566-33895752,33895797-33895841,
           33895850-33895917,33896093-33896186,33896284-33896475,
           33896656-33896736,33897363-33897425
          Length = 645

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 332 CCLAFRRTWAAILSRSRLPCVVRMRPRPELSQQASMPPTI 213
           CC  +     + + RSR P V+ +  RP  S  + +PP++
Sbjct: 479 CCYNWMEMDLSSVDRSRTPWVIFIGHRPMYSSSSGIPPSV 518


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +2

Query: 74  AILRHIYIRSPVGVKTVTKIFGGRKRN-GVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 250
           ++  H  +R+ + ++T   +  G+K      PS +CR    +    LQ+ +  KL EKV+
Sbjct: 578 SLTAHTDLRTLILLRTQKMVLSGQKSEIKEIPSDYCRYLTYLRVLDLQATKINKLPEKVE 637

Query: 251 DVVAFSPHKVDETLTESLPRFV*R 322
            +       + +T  + LP  + R
Sbjct: 638 MLSNLRYLNLSQTDIDKLPESIGR 661


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 89  IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 205
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>05_07_0173 +
           28140484-28140869,28141079-28141481,28141719-28141781,
           28142350-28142535,28144695-28145076,28145689-28145780,
           28145988-28146737,28146969-28147100,28147149-28147247,
           28147977-28148132,28150187-28150317,28150798-28151254,
           28151327-28151668,28152137-28153001,28153112-28153170,
           28153806-28154261,28154835-28154873,28155016-28155201
          Length = 1727

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 80  LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRS---SGSIARKALQSLEALKLVEKVQ 250
           LRH         K   +  G  + +GVT +  C+S    G+     +QSL++ KL+ +  
Sbjct: 107 LRHSKSEMSAVQKKALQRVGASRTSGVTQNDLCKSFGMEGNNFHYIVQSLQSQKLIVRRS 166

Query: 251 DVVAF 265
            ++ F
Sbjct: 167 TIIKF 171


>12_01_0035 -
           295988-296408,296645-296813,296929-296965,297097-297173,
           297391-297631
          Length = 314

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 162 HLHISAGHQAVLHARLCNRW 221
           H HI+AG   +L +R+ N W
Sbjct: 161 HRHITAGSGTILQSRVANAW 180


>08_01_0036 -
           267236-268165,268255-268299,268485-268574,269485-269805,
           269895-270098,271532-271664,271810-271881,273106-273168,
           273252-275034,275169-275217
          Length = 1229

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 51  IGSMCVELPSFVIFTFAHLLESRLSPRSLVGANVMELHLHISAGHQAVL 197
           +G++ + LP F+       +   LSPR L+ A V EL L    GH A L
Sbjct: 162 LGNLVLALPGFLSLVAVRSIPQELSPR-LLWAPVFEL-LADHRGHPAFL 208


>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
          Length = 1274

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 157 SITFAPTKDLGDSLDSNR*ANVNMTKDG-SSTHIEPIRVIRSQ 32
           +   +PT D+  + DS     +N T DG +S HI  + +  SQ
Sbjct: 104 TFVISPTSDMSSAQDSQYLGLLNKTSDGKASNHIFAVELDSSQ 146


>06_03_0203 -
           17863130-17863940,17864023-17864341,17864653-17864716,
           17864811-17864929,17865515-17865640,17866626-17866632,
           17867421-17867562,17867720-17867738,17868082-17868292
          Length = 605

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 251 PELSQQASMPPTIAKPCVQYCLMTCRNVK 165
           P+L ++  +  T   P V++C MTCR ++
Sbjct: 379 PKLEERREILGTRLLPLVRFCHMTCRKLR 407


>06_01_0721 -
           5255422-5255790,5256287-5256660,5256845-5257192,
           5257369-5257497,5257585-5257658,5257745-5257816,
           5257901-5257969,5258059-5258130,5258208-5258279,
           5258512-5258583,5258735-5258806,5258887-5258958,
           5259050-5259121,5259203-5259274,5259427-5259498,
           5259599-5259670,5259764-5259832,5260072-5260143,
           5260428-5260499,5260579-5260650,5260919-5260990,
           5261015-5261161,5261249-5261378,5262212-5262290
          Length = 931

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 281 LPCVVRMRPRPELSQQASMPPTIAKP 204
           L C+VR  P P+ +QQ +MP   A P
Sbjct: 865 LDCLVRPDPPPKSAQQLAMPQRPAVP 890


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,916,555
Number of Sequences: 37544
Number of extensions: 193695
Number of successful extensions: 572
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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