Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30825
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          66   1e-11
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.21 
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)                   28   3.4  
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)                      28   3.4  
SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)                    27   4.5  
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                27   4.5  
SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)                      27   5.9  
SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_43469| Best HMM Match : Retrotrans_gag (HMM E-Value=0.005)          27   5.9  
SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_7344| Best HMM Match : FLO_LFY (HMM E-Value=2.5)                    27   7.8  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 38/81 (46%), Positives = 44/81 (54%)
 Frame = +2

Query: 2   DLVKTARFKELAPYDPDWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCR 181
           DLVKT +FKELAPYDPDW+Y+R                        GRK  G  PSHF  
Sbjct: 12  DLVKTGKFKELAPYDPDWYYIR-----------------------AGRKNRGSAPSHFEV 48

Query: 182 SSGSIARKALQSLEALKLVEK 244
            S S+AR  L+ LE +KLVEK
Sbjct: 49  GSASVARSVLKGLEQIKLVEK 69



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 241 ESSGRGRILTTQGRRDLDRI 300
           ++S  GR +T+QG+RD+DRI
Sbjct: 69  KASTGGRNITSQGQRDMDRI 88


>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 58  LCALSCHPSSYLHSLTCWSQDCHQ 129
           LC+ SC   S+ H+LTC ++ CHQ
Sbjct: 99  LCSQSCVWESHCHALTCTARICHQ 122


>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 50  DWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEAL 229
           D +YVR A +     I +  G   + +I   R+R  VTPS    S G    + L  L+ +
Sbjct: 57  DQWYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRM 116

Query: 230 KL 235
           +L
Sbjct: 117 QL 118


>SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)
          Length = 566

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +2

Query: 140 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDVVAFSPHKVDETLT 295
           GRK++  T +H C   G++  K  + +  +     V+ +   S  +V   +T
Sbjct: 246 GRKKDHGTVTHTCEDHGNVTHKCRKGITVMSRTRLVRRITVMSRTRVLRRIT 297


>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 880

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 278 PCVVRMRPRPELSQQASMP 222
           PC+V + PRPELS  A  P
Sbjct: 252 PCLVGLVPRPELSSDACTP 270


>SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)
          Length = 204

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 332 RLSNKSLYFNFMLIKI*N 385
           R+ NKS++FNF ++KI N
Sbjct: 48  RVENKSIFFNFQVLKIAN 65


>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/50 (26%), Positives = 18/50 (36%)
 Frame = +1

Query: 61  CALSCHPSSYLHSLTCWSQDCHQDLWWAQT*WSYTFTFLQVIRQYCTQGF 210
           C + C     L  L C  Q CH    W    W +     +    +C +GF
Sbjct: 184 CIICCEGDDELELLPCCKQPCHYPCLWK---WVHAHLTPRSTCPHCRKGF 230


>SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)
          Length = 521

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 320 FRRTWAAILSR--SRLPCVVRMRPRPELSQQASMPPTIAKP 204
           F+++ + ILS+  ++ P   R +PR E  +  + PPT  +P
Sbjct: 243 FQKSVSEILSQVSTKQPATERPKPRTEKPRPITQPPTTQRP 283


>SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 154 ITFAPTKDLGDSLDSNR*ANVNMTKDGSSTHIEPIRVIR 38
           + FAP  +L   L   R ++ + ++  SSTH +P  ++R
Sbjct: 811 VEFAPHGNLRQFLRERRPSDYHRSRSDSSTHSQPSLIVR 849


>SB_43469| Best HMM Match : Retrotrans_gag (HMM E-Value=0.005)
          Length = 176

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 194 IARKALQSLEALKLVEKVQDVVAF 265
           IARK LQ   +LKL E VQ+  AF
Sbjct: 144 IARKLLQKGNSLKLSEAVQEASAF 167


>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 144 ANVMELHLHISAGHQAVL--HARLCNRWRH*SLLRKFRTWSHSHHT 275
           A+V   H H+++ H  V   HA + + + H +      T SH+H T
Sbjct: 384 AHVTSSHAHVTSSHAHVTSSHAHVTSSYTHVTTSYAHATSSHAHVT 429


>SB_7344| Best HMM Match : FLO_LFY (HMM E-Value=2.5)
          Length = 358

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 344 CCLACCLAFRRTWAAILSRSRLPCVVRMRPRPELSQQASMPP 219
           C +ACCL   +       R      ++M PRP  S   + PP
Sbjct: 172 CFVACCLNLMQKRKENARRREHKRNIQMEPRPSTSGTLNTPP 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,389,584
Number of Sequences: 59808
Number of extensions: 227074
Number of successful extensions: 584
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)