Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30825
(409 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 98 2e-21
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 98 2e-21
AF063009-2|AAO21399.1| 438|Caenorhabditis elegans Innexin prote... 29 0.98
AF063009-1|AAM45360.1| 454|Caenorhabditis elegans Innexin prote... 29 0.98
Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z37092-11|CAA85461.2| 334|Caenorhabditis elegans Hypothetical p... 26 9.1
U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory ... 26 9.1
U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical pr... 26 9.1
U23179-4|AAK68209.1| 341|Caenorhabditis elegans Serpentine rece... 26 9.1
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 26 9.1
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 26 9.1
L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degeneri... 26 9.1
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 98.3 bits (234), Expect = 2e-21
Identities = 46/84 (54%), Positives = 57/84 (67%)
Frame = +2
Query: 2 DLVKTARFKELAPYDPDWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCR 181
DLVK KELAP DPDWFY R A++ RH+Y R P G+ K++GG KR GV P+HF
Sbjct: 36 DLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQT 94
Query: 182 SSGSIARKALQSLEALKLVEKVQD 253
S+G+ RKA+Q LE +K VEK D
Sbjct: 95 SAGNCLRKAVQQLEKIKWVEKHPD 118
Score = 32.3 bits (70), Expect = 0.14
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 250 GRGRILTTQGRRDLDRI 300
G+GRIL+ QGR+DLDRI
Sbjct: 119 GKGRILSKQGRKDLDRI 135
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 98.3 bits (234), Expect = 2e-21
Identities = 46/84 (54%), Positives = 57/84 (67%)
Frame = +2
Query: 2 DLVKTARFKELAPYDPDWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCR 181
DLVK KELAP DPDWFY R A++ RH+Y R P G+ K++GG KR GV P+HF
Sbjct: 36 DLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQT 94
Query: 182 SSGSIARKALQSLEALKLVEKVQD 253
S+G+ RKA+Q LE +K VEK D
Sbjct: 95 SAGNCLRKAVQQLEKIKWVEKHPD 118
Score = 32.3 bits (70), Expect = 0.14
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 250 GRGRILTTQGRRDLDRI 300
G+GRIL+ QGR+DLDRI
Sbjct: 119 GKGRILSKQGRKDLDRI 135
>AF063009-2|AAO21399.1| 438|Caenorhabditis elegans Innexin protein
19, isoform b protein.
Length = 438
Score = 29.5 bits (63), Expect = 0.98
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 173 FCRSSGSIARKALQSLEALKLVEKVQDVVAFSPHKVDETLTESL 304
F + + S K LQ E VE++ V+AF+PH +D +++ L
Sbjct: 324 FIQIAESSEFKKLQKFEKDATVERLYTVIAFAPHLLDTFVSDFL 367
>AF063009-1|AAM45360.1| 454|Caenorhabditis elegans Innexin protein
19, isoform a protein.
Length = 454
Score = 29.5 bits (63), Expect = 0.98
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 173 FCRSSGSIARKALQSLEALKLVEKVQDVVAFSPHKVDETLTESL 304
F + + S K LQ E VE++ V+AF+PH +D +++ L
Sbjct: 340 FIQIAESSEFKKLQKFEKDATVERLYTVIAFAPHLLDTFVSDFL 383
>Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 133 DLGDSLDSNR*ANVNMTKDGSSTHIEPIRVIRSQLFE 23
D+GD S + V +DGS H++ I++I +++
Sbjct: 495 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 133 DLGDSLDSNR*ANVNMTKDGSSTHIEPIRVIRSQLFE 23
D+GD S + V +DGS H++ I++I +++
Sbjct: 724 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760
>Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 133 DLGDSLDSNR*ANVNMTKDGSSTHIEPIRVIRSQLFE 23
D+GD S + V +DGS H++ I++I +++
Sbjct: 495 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 133 DLGDSLDSNR*ANVNMTKDGSSTHIEPIRVIRSQLFE 23
D+GD S + V +DGS H++ I++I +++
Sbjct: 724 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760
>Z37092-11|CAA85461.2| 334|Caenorhabditis elegans Hypothetical
protein F44F4.13 protein.
Length = 334
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 63 CVELPSFVIFTFAHLLESRL 122
C+ +PS +IFTF + RL
Sbjct: 289 CIAIPSLIIFTFRFIKNQRL 308
>U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory
abnormality protein10 protein.
Length = 724
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 356 STMTCCLACCLAFRRTWAAI 297
S MTCC CLAF + AI
Sbjct: 686 SVMTCCEFVCLAFELIYMAI 705
>U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical
protein R02E12.4 protein.
Length = 639
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 67 LSCHPSSYLHSLTCWSQDCHQDLWWA 144
L HP L W Q CH+ ++W+
Sbjct: 85 LKLHPEQELPEDIKWEQCCHETVFWS 110
>U23179-4|AAK68209.1| 341|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 3 protein.
Length = 341
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 257 VAFSPHKVDETLTESLPRFV*RPSSRLSNKSLYFNFML-IKI*NL 388
+ FS +K +E TE F+ PS+ S ++YF +L +KI NL
Sbjct: 158 IIFSVYK-NEPFTEGFYSFILVPSTTASQINMYFFVLLFVKIFNL 201
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 26.2 bits (55), Expect = 9.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 95 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDVVA 262
I+S KT IF G ++ T + + KAL SL+ + LV+ VQD ++
Sbjct: 754 IKSQGFPKTANAIFQGEEQ---TEDDCQDALAKVFEKALVSLQGMALVQSVQDCLS 806
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 26.2 bits (55), Expect = 9.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 95 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDVVA 262
I+S KT IF G ++ T + + KAL SL+ + LV+ VQD ++
Sbjct: 754 IKSQGFPKTANAIFQGEEQ---TEDDCQDALAKVFEKALVSLQGMALVQSVQDCLS 806
>L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degenerin
protein.
Length = 724
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 356 STMTCCLACCLAFRRTWAAI 297
S MTCC CLAF + AI
Sbjct: 686 SVMTCCEFVCLAFELIYMAI 705
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,206,574
Number of Sequences: 27780
Number of extensions: 160210
Number of successful extensions: 479
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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