Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30825
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...   109   9e-25
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...   107   3e-24
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...   104   2e-23
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote...    28   2.1  
At4g16095.1 68417.m02440 disease resistance protein-related cont...    27   6.4  
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si...    26   8.5  
At3g27940.1 68416.m03487 LOB domain family protein / lateral org...    26   8.5  

>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  109 bits (261), Expect = 9e-25
 Identities = 47/80 (58%), Positives = 59/80 (73%)
 Frame = +2

Query: 2   DLVKTARFKELAPYDPDWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCR 181
           D+VKT R KELAPYDPDW+Y+R A++ R IY+R  +GV    +I+GG KRNG  P HFC+
Sbjct: 36  DIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCK 95

Query: 182 SSGSIARKALQSLEALKLVE 241
           SSG IAR  LQ LE + +VE
Sbjct: 96  SSGGIARHILQQLETMSIVE 115


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score =  107 bits (257), Expect = 3e-24
 Identities = 45/80 (56%), Positives = 59/80 (73%)
 Frame = +2

Query: 2   DLVKTARFKELAPYDPDWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCR 181
           D+VKT + KELAPYDPDW+Y+R A++ R +Y+R  +GV    +I+GG KRNG  P HFC+
Sbjct: 36  DIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCK 95

Query: 182 SSGSIARKALQSLEALKLVE 241
           SSG IAR  LQ LE + +VE
Sbjct: 96  SSGGIARHILQQLETMNIVE 115


>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  104 bits (250), Expect = 2e-23
 Identities = 42/80 (52%), Positives = 59/80 (73%)
 Frame = +2

Query: 2   DLVKTARFKELAPYDPDWFYVR*AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCR 181
           D+VKT + KELAPYDPDW+Y+R A++ R +Y+R  +GV    +I+GG KRNG  P HFC+
Sbjct: 36  DIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCK 95

Query: 182 SSGSIARKALQSLEALKLVE 241
           SSG +AR  LQ L+ + +V+
Sbjct: 96  SSGGVARHILQQLQTMNIVD 115


>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 2 GI:3360291 from [Zea
           mays]
          Length = 693

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +2

Query: 104 PVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDVVAFSPHKVD 283
           P GVK   K  G +   G+T       +G+     +  +  + LV K +   + SPH +D
Sbjct: 250 PPGVKYGRKSSGSKDGGGITAGTGMVIAGACLGVLVLIIVLIALVSKKKS--SLSPHFID 307

Query: 284 ETLTESLPRF 313
           E  +   P+F
Sbjct: 308 EDNSHHTPKF 317


>At4g16095.1 68417.m02440 disease resistance protein-related
           contains weak similarity to rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631
          Length = 187

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 251 PELSQQASMPPTIAKPCVQYCLM 183
           P L  Q   PP +   C++YC M
Sbjct: 88  PRLPDQHRFPPNLTNICLRYCCM 110


>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]
          Length = 429

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 295 CQGLVYLVW*ECDHVLNFLNKLQCLQRLQSLACN 194
           C+    ++W    +V+NF+N  +CL   ++L C+
Sbjct: 382 CRYFETIIW----YVVNFMNNYECLDTRKTLICD 411


>At3g27940.1 68416.m03487 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD26) identical to
           SP|Q9LIJ0 LOB domain protein 26 {Arabidopsis thaliana};
           similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 153

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 314 RTWAAILSRSRLPCVVRMRPRPELSQQASMPPTIAK 207
           +T   + S SR PCVV   P P+ +Q  S P  + K
Sbjct: 100 KTKKLLASYSR-PCVVLALPAPKYTQSKSKPSVLRK 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,794,576
Number of Sequences: 28952
Number of extensions: 150818
Number of successful extensions: 379
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)