Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30824
         (746 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56721 Cluster: PREDICTED: similar to CG3541-PB,...    42   0.021
UniRef50_Q8IRK0 Cluster: CG3541-PB, isoform B; n=5; Diptera|Rep:...    41   0.028
UniRef50_A2EXK5 Cluster: Surface antigen BspA-like; n=1; Trichom...    33   7.5  
UniRef50_UPI00006CF236 Cluster: hypothetical protein TTHERM_0005...    33   9.9  
UniRef50_Q9DVU0 Cluster: DNA polymerase; n=1; Plutella xylostell...    33   9.9  

>UniRef50_UPI0000D56721 Cluster: PREDICTED: similar to CG3541-PB,
           isoform B; n=3; Endopterygota|Rep: PREDICTED: similar to
           CG3541-PB, isoform B - Tribolium castaneum
          Length = 412

 Score = 41.5 bits (93), Expect = 0.021
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +1

Query: 46  KAYSRTGSSLYSGPYTNTGYSHTS 117
           K  S  GSS+YSGPYTNT YSH+S
Sbjct: 389 KTSSNPGSSIYSGPYTNTAYSHSS 412


>UniRef50_Q8IRK0 Cluster: CG3541-PB, isoform B; n=5; Diptera|Rep:
           CG3541-PB, isoform B - Drosophila melanogaster (Fruit
           fly)
          Length = 462

 Score = 41.1 bits (92), Expect = 0.028
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +1

Query: 46  KAYSRTGSSLYSGPYTNTGYSHTS 117
           K  S +GSS+YSGPYTNT +SH+S
Sbjct: 439 KTVSNSGSSIYSGPYTNTAFSHSS 462


>UniRef50_A2EXK5 Cluster: Surface antigen BspA-like; n=1;
           Trichomonas vaginalis G3|Rep: Surface antigen BspA-like
           - Trichomonas vaginalis G3
          Length = 898

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -3

Query: 381 IENLSFIAIISFNIKFDVLKPIS-SK*NGTFPQKLHDDKLFKYCGNDVLFTQKKK--VNQ 211
           + NL+    I FN KFD+   I     N     KL   KLFKY  N  +F   K+  ++ 
Sbjct: 699 LSNLTIKCDIDFNYKFDISNHIKFVSFNNENLTKLVSLKLFKYMKNLTIFNVSKEIVIDN 758

Query: 210 SIIDL*IDTTVNDY 169
           ++ DL  +  V+ Y
Sbjct: 759 NLFDLNTELNVHVY 772


>UniRef50_UPI00006CF236 Cluster: hypothetical protein TTHERM_00053770;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00053770 - Tetrahymena thermophila SB210
          Length = 3176

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
 Frame = -3

Query: 357  IISFNIKFDVLKPISSK*NGTFPQKLHDDKLFKYC-GNDVLFTQKKKVNQSIIDL*IDTT 181
            ++S   +F+ ++ +S +    FP K  DD+++  C  N   +T  + V ++ I L + ++
Sbjct: 855  LVSEKQQFNEIQFVSIRNQDLFPNKTIDDQIYNSCISNTTKYTLSQAVQKTPIYLFVQSS 914

Query: 180  VNDYFDGRVFFFYGQCSSDVLACV*IAGVSVRAAVQGAASPRVRL 46
            +N   DG    +    ++ V   + I   S +   Q + S  V+L
Sbjct: 915  LNLIIDGSTDKYISTTANLVNIQIEIPKFSGQFIYQNSGSVNVQL 959


>UniRef50_Q9DVU0 Cluster: DNA polymerase; n=1; Plutella xylostella
           granulovirus|Rep: DNA polymerase - Plutella xylostella
           granulovirus
          Length = 979

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -3

Query: 384 LIENLSFIAIISFNIKFDVLKPISSK*NGTFPQKLHDDK-LFKYCGNDVLFTQKKKVNQS 208
           L E      I+ +N++  VL P++         KL+ D  L   C +D + T   K+N +
Sbjct: 342 LYERGEMAKIVEYNVRDSVL-PVNIFLKCQVANKLYADAALMNLCRDDYMKTISHKINLA 400

Query: 207 IIDL*IDTTVNDYFDGRVF 151
           + D  +  T+ND  D   F
Sbjct: 401 LFDRALKNTLNDSADSYFF 419


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,235,398
Number of Sequences: 1657284
Number of extensions: 11866541
Number of successful extensions: 22842
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22838
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)