Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30824
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    28   1.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.8  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    26   6.6  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    26   6.6  

>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 378 ENLS-FIAIISFNIKFDVLKPISSK*NGTFPQKLHDDKLFKYCGNDVLFTQKKKV 217
           EN S FI + S N++F  LKP ++   G F   L DD   K+        Q KK+
Sbjct: 10  ENSSVFIKLPSDNVRFVTLKPNNTIHLGKFGSFLADDLFGKHFDETFEIYQPKKI 64


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 359 QLFRLISNSMY*NR*VPNKMALSHKNFTTTNFLN 258
           QL   IS+S+  +  +PN +  S  NF+ ++FLN
Sbjct: 436 QLTSRISSSVSPSNVIPNSLTSSVSNFSVSSFLN 469


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 683 VITLKLSQIFSYINIIRRCFLSFILSGS 600
           V+ +KL+QI    ++I  C L FI+S +
Sbjct: 322 VVAIKLAQIKVMPDVINACLLVFIISSA 349


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 3   HSGYRLHTGSTKESEGVLADWQLPVQRP 86
           + GY +      E+E  LA+WQ P Q P
Sbjct: 240 YDGYNITRDYIVEAERELANWQNPFQTP 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,016
Number of Sequences: 5004
Number of extensions: 55000
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)