Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30824
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal p...    28   8.1  
U23453-4|AAC46756.2|  564|Caenorhabditis elegans Acid sphingomye...    28   8.1  
AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.      28   8.1  

>U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal
           protein 7 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 243 RRCRNI*KVCRREVFVGKCHFI 308
           R+CRNI K C R     KCH I
Sbjct: 69  RKCRNIYKSCDRWAVEDKCHTI 90


>U23453-4|AAC46756.2|  564|Caenorhabditis elegans Acid
           sphingomyelinase protein 1 protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 396 FQP*LIENLSFIAIISFNIKFDVLKPI 316
           FQP  I     I++ SF +KFDV +P+
Sbjct: 37  FQPLCISCTGLISVASFFLKFDVSEPV 63


>AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 243 RRCRNI*KVCRREVFVGKCHFI 308
           R+CRNI K C R     KCH I
Sbjct: 69  RKCRNIYKSCDRWAVEDKCHTI 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,818
Number of Sequences: 27780
Number of extensions: 305546
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)