Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30824
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33580.1 68417.m04771 carbonic anhydrase family protein / car...    29   3.3  
At1g60160.1 68414.m06777 potassium transporter family protein si...    28   5.7  
At1g48660.1 68414.m05446 auxin-responsive GH3 family protein sim...    28   7.6  

>At4g33580.1 68417.m04771 carbonic anhydrase family protein /
           carbonate dehydratase family protein similar to
           SP|P46512 Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate
           dehydratase 1) {Flaveria linearis}; contains Pfam
           profile PF00484: Carbonic anhydrase
          Length = 301

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 311 PNKMALSHKNFTTTNFLNIAATTFFSHXXXX*TNRLSIYKSIRQLMTIL 165
           P   ++SH  F++T+ LN+     F       T +L I  S R+  T L
Sbjct: 5   PTHFSVSHDPFSSTSLLNLQTQAIFGPNHSLKTTQLRIPASFRRKATNL 53


>At1g60160.1 68414.m06777 potassium transporter family protein
           similar to potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 827

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 83  PLYRELPVREYAFGFLRRASMK 18
           PL+ E+  R+Y+FG LRR  MK
Sbjct: 36  PLFSEIRDRDYSFGNLRRRLMK 57


>At1g48660.1 68414.m05446 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 573

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 547 NYKTITNSGYLLAINNLTDPDNIKDKKQRLIIFI 648
           N K I N GYLLA+++L   ++  D+K + + F+
Sbjct: 104 NDKYIENLGYLLAVSSLITSNDKVDEKGKKMAFL 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,050,929
Number of Sequences: 28952
Number of extensions: 261269
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)