Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30823
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   135   4e-33
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   135   4e-33
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   6.3  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  135 bits (327), Expect = 4e-33
 Identities = 63/86 (73%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 KVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 434
           KVIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF+V + DIE+W N
Sbjct: 32  KVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVN 91

Query: 435 -LLPSRQFGYLVLTTSGGIMDHEEAR 509
            LLPSRQ G +VLTTS GIM H EAR
Sbjct: 92  QLLPSRQVGVIVLTTSRGIMSHNEAR 117



 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +1

Query: 163 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
           MVR +VL+D L +I NAE+RG+RQVLIRP SK  + F
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKF 37


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  135 bits (327), Expect = 4e-33
 Identities = 63/86 (73%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 KVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 434
           KVIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF+V + DIE+W N
Sbjct: 32  KVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVN 91

Query: 435 -LLPSRQFGYLVLTTSGGIMDHEEAR 509
            LLPSRQ G +VLTTS GIM H EAR
Sbjct: 92  QLLPSRQVGVIVLTTSRGIMSHNEAR 117



 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +1

Query: 163 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
           MVR +VL+D L +I NAE+RG+RQVLIRP SK  + F
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKF 37


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -2

Query: 511 SLASSWSMMPPLVVRTR*PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTTILPA 332
           ++ S +S+ P +   T     R        S+S   +      TPH F  PV   + LPA
Sbjct: 142 TVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFTPHAFVPPVNNASPLPA 201

Query: 331 L 329
           L
Sbjct: 202 L 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,360
Number of Sequences: 5004
Number of extensions: 40488
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)