Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30823
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 151 4e-37
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 151 4e-37
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 92 3e-19
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 42 3e-04
02_02_0552 + 11426761-11428815 29 3.7
11_01_0526 - 4140853-4141017,4141416-4141619 28 4.9
11_01_0755 - 6343084-6345172,6345526-6346367 28 6.5
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580... 27 8.5
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 151 bits (366), Expect = 4e-37
Identities = 70/90 (77%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 KVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT- 431
KVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 32 KVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTA 91
Query: 432 NLLPSRQFGYLVLTTSGGIMDHEEARENTL 521
LLPSRQFGY+VLTTS GIMDHEEAR +
Sbjct: 92 RLLPSRQFGYIVLTTSAGIMDHEEARRKNV 121
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +1
Query: 163 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
MVR++VL+DALK+++NAEKRGKRQVLIRP SK + F
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKF 37
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 151 bits (366), Expect = 4e-37
Identities = 70/90 (77%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 KVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT- 431
KVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 32 KVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTA 91
Query: 432 NLLPSRQFGYLVLTTSGGIMDHEEARENTL 521
LLPSRQFGY+VLTTS GIMDHEEAR +
Sbjct: 92 RLLPSRQFGYIVLTTSAGIMDHEEARRKNV 121
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/37 (67%), Positives = 33/37 (89%)
Frame = +1
Query: 163 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
MVR++VL+DALK+++NAEKRGKRQV+IRP SK + F
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKF 37
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/89 (46%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Frame = +3
Query: 243 QALFKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIE 422
Q + V+V FL +M GYI +FE++D HR GKI V L GR+ C ++ R D+ +IE
Sbjct: 27 QPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIKDCKALTYRQDIRAKEIE 86
Query: 423 RW-TNLLPSRQFGYLVLTTSGGIMDHEEA 506
++ +LP+RQ+GY+V+TT G++DHEEA
Sbjct: 87 QYRVRMLPTRQWGYVVITTPNGVLDHEEA 115
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +1
Query: 178 VLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
+L+DAL+++ NAE+RGK L++P S +SF
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSF 36
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 318 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 419
VDDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>02_02_0552 + 11426761-11428815
Length = 684
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 409 STILKDGLICSPHDSLVT*SLQQVV--ASWTMKKPERTPWRKNFRL 540
S +LK GL+CS S V +++QVV + M PE +P R F L
Sbjct: 613 SLVLKLGLLCSHPMSNVRPTMRQVVQYLNGDMPLPEMSPMRFTFSL 658
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 336 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 431
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>11_01_0755 - 6343084-6345172,6345526-6346367
Length = 976
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -1
Query: 365 SACEIYNNLASSVIINDFKLSDVTVLHH--HC*KLNDDFEQGLMRTCLFPRFSALCI 201
S C + SS +N LS+V LHH + + D + +++ FPR LC+
Sbjct: 787 SLCGLTELCLSSTNLNKEDLSNVCTLHHLLYLKLVESDLQGFIIKNGDFPRMRHLCL 843
>06_01_0776 -
5805555-5805639,5805769-5806008,5806103-5806173,
5806274-5806627
Length = 249
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 16 CPSEEKAFQEKACASKGEDDE 78
C EE+A EK C GED +
Sbjct: 108 CSGEEEAMAEKVCTQAGEDHD 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,818,233
Number of Sequences: 37544
Number of extensions: 250024
Number of successful extensions: 561
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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